View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3278_low_3 (Length: 331)
Name: NF3278_low_3
Description: NF3278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3278_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 9232033 - 9231708
Alignment:
| Q |
1 |
atcggttttgagacgaaaaggatatgttatgttgcgaattttgccgcaagatgaagttggacatggttggtgattcttagctagacaattttgatggaat |
100 |
Q |
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| T |
9232033 |
atcggttttgagacgaaatggatatgttatgttgcgaattttgccgcaagatgaagttggacatggttggtgatgcttagctagacaattttgatggaat |
9231934 |
T |
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| Q |
101 |
aggataaaaattgaagcaaatatttttaccaatgtttgtagttgtacaaatgatgaacaagaaaatcgagcttgtcttttcatcattcaagtcttcnnnn |
200 |
Q |
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| T |
9231933 |
aggataaaaattgaagcaaatatttttaccaatgtttgtagttgtacaaatgatgaacaagaaaattgagcttgtcttttcatcattcaagtcttcaaaa |
9231834 |
T |
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| Q |
201 |
nnntatgaaattttttaaaacaagccctcatgagaaaatgttgtgattggtttatgtttttaaattttataaatgggtcaatcatttatcattaggttgc |
300 |
Q |
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| T |
9231833 |
aaatatgaaattttttaaaacaagccctcatgagaaaatgttgtgattggtttatgttttttaattttataaatgggtcaatcatttatcattaggttgc |
9231734 |
T |
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| Q |
301 |
caccatatctagctgcctttgcttct |
326 |
Q |
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| T |
9231733 |
caccatatctagctgtctttgtttct |
9231708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 9386616 - 9386733
Alignment:
| Q |
5 |
gttttgagacgaaaaggatatgttatgttgcgaattttgccgcaagatgaagttggacatggttggtgattcttagctagacaattttgatggaatagga |
104 |
Q |
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| T |
9386616 |
gttttgagacgaaatgggtatgttatgttggtgattttgccgcatgatgacgttgggcatggttggtgatgcttagcaagacaattttgatgagaaatga |
9386715 |
T |
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| Q |
105 |
taaaaattgaagcaaata |
122 |
Q |
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| T |
9386716 |
gaagaattgaagcaaata |
9386733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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