View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3278_low_5 (Length: 296)
Name: NF3278_low_5
Description: NF3278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3278_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 32590402 - 32590662
Alignment:
| Q |
19 |
catttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatataggaaaatgaagaaaataattgattttttctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
32590402 |
catttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatataggaaaatgaagaaaataattggtttt--ctttt |
32590499 |
T |
|
| Q |
119 |
ctttcatgactcaattattacgcaaaaagtgacattgtataatgttggaatgtgagttatcatattaatttgacctatgccaattatctttaatatctcc |
218 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32590500 |
ctttcatgattcaattattatgcaaaaagagacatcgtataatgtgagaatgtgaattatcatattaattttacctatgccaattatctttaatatctcc |
32590599 |
T |
|
| Q |
219 |
tgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32590600 |
tgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
32590662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 32601022 - 32601133
Alignment:
| Q |
170 |
gtgagttatcatattaatttgacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
269 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
32601022 |
gtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgtagcaggatcttc |
32601121 |
T |
|
| Q |
270 |
ctttcccctatg |
281 |
Q |
| |
|
| ||||||||| |
|
|
| T |
32601122 |
ccatcccctatg |
32601133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 32600850 - 32600946
Alignment:
| Q |
19 |
catttatcgtttacatctattatagaagtcatccta-ggga-ggaataaagttagttggtcataatataggaaaatgaagaaaataattgatttttt |
113 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32600850 |
catttgtcatttacatctattatagaagtcatgctaagggatggaataaagttagttggtcataatataagaaaatgaagaaaataattgatttttt |
32600946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
191 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacact |
245 |
Q |
| |
|
|||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 281
Target Start/End: Original strand, 34594091 - 34594181
Alignment:
| Q |
191 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
281 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
34594091 |
acctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg |
34594181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 34578398 - 34578470
Alignment:
| Q |
198 |
ccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcc |
270 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
34578398 |
ccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcc |
34578470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University