View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3278_low_6 (Length: 260)
Name: NF3278_low_6
Description: NF3278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3278_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 260
Target Start/End: Complemental strand, 38180970 - 38180745
Alignment:
| Q |
35 |
aaaaagattctaagaaaaactattaacaaggatcaagagataaatgagttgtnnnnnnncatgcttatagatgagtaccccacagtacttggtcatcccg |
134 |
Q |
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| T |
38180970 |
aaaaagattctaagaaaaactattaacaaggatcaagagataaatgagttgtagaaaaacatgcttatggatgagtaccccacagaacttggtcatcccg |
38180871 |
T |
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| Q |
135 |
aacgtcagcatggacaccacttgtataaaaacactcggcttatgctatccatccatatacatgcataaccgttgcatatcacacttcctttactctactg |
234 |
Q |
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| T |
38180870 |
aacgtcagcatggacaccacttgtataaaaacacttagcttatgctatccatccatatacattcataaccgttgcatatcacacttcctttactctactg |
38180771 |
T |
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| Q |
235 |
gttcgtgctattgcattttcacaagc |
260 |
Q |
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| T |
38180770 |
gttcgtgctattgcattttcacaagc |
38180745 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 17213226 - 17213264
Alignment:
| Q |
46 |
aagaaaaactattaacaaggatcaagagataaatgagtt |
84 |
Q |
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| T |
17213226 |
aagaaaaactattaacaaggatctagagattaatgagtt |
17213264 |
T |
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