View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3279-Insertion-3 (Length: 1100)

Name: NF3279-Insertion-3
Description: NF3279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3279-Insertion-3
NF3279-Insertion-3
[»] chr5 (19 HSPs)
chr5 (224-444)||(34429248-34429468)
chr5 (8-225)||(34429552-34429769)
chr5 (532-769)||(34428926-34429160)
chr5 (871-1045)||(34428747-34428926)
chr5 (9-179)||(34679214-34679384)
chr5 (11-183)||(34427538-34427714)
chr5 (10-188)||(18271531-18271709)
chr5 (15-163)||(34686376-34686524)
chr5 (313-420)||(34421053-34421160)
chr5 (27-177)||(34421363-34421513)
chr5 (319-444)||(34426855-34426973)
chr5 (21-167)||(27841197-27841343)
chr5 (317-444)||(34679490-34679617)
chr5 (46-161)||(34650335-34650450)
chr5 (224-444)||(27840364-27840591)
chr5 (303-444)||(34651102-34651243)
chr5 (317-444)||(34686684-34686811)
chr5 (557-611)||(27840190-27840244)
chr5 (554-620)||(34426675-34426741)
[»] chr1 (2 HSPs)
chr1 (24-158)||(2067572-2067706)
chr1 (317-434)||(2067158-2067275)
[»] chr7 (2 HSPs)
chr7 (317-418)||(45160886-45160987)
chr7 (25-158)||(45161200-45161333)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 224 - 444
Target Start/End: Complemental strand, 34429468 - 34429248
Alignment:
Q  224 aaatcaattactttacgataaatatttttcattcttgttaacatacctattttatgagagttaaatcactaacccatgttttttgtgctttgtaggtggt 323  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34429468 aaatcaattactttacgataaatatttttcactcttgttaacatacctattttatgagagttaaatcactaacccatgtttttggtgctttgtaggtggt 34429369  T
Q  324 aaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggattggcagct 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34429368 aaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggattggcagct 34429269  T
Q  424 tcaattaagaaatcaatgagt 444  Q
    |||||||||||||||||||||    
T  34429268 tcaattaagaaatcaatgagt 34429248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 34429769 - 34429552
Alignment:
Q  8 ggttatcgatctcaaaatatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctaca 107  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34429769 ggttatcaatctcaagatatttatactttttgaattaaaggtgcgcgactcagctgttcaactccgagcaactggagaagtgattttgggagatgctaca 34429670  T
Q  108 ttgggtgctatccacatccagaaaggagtggttgatcctcattttgtggtatgataacataatataatatttttgtggatgcagtcaaaattgcttttat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34429669 ttgggtgctatccacatccagaaaggagtggttgatcctcattttgtggtatgataacataatataatatttttgtggatgcagtctaaattgcttttat 34429570  T
Q  208 ttggctgtgtcctgttaa 225  Q
    ||| ||||| ||||||||    
T  34429569 ttgactgtgccctgttaa 34429552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 532 - 769
Target Start/End: Complemental strand, 34429160 - 34428926
Alignment:
Q  532 catcgttgggaactataatgttatattgtttgtgtttatgccggtgaatctcttagtcaaatacctaacaaaacccaagttcgaaagtgacttgagtcta 631  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34429160 catcgttgagaactataatgttatattgtttgtgtttatgctggtgaatctcttagtcaaatacctaacaaaacccaagttcgaaagtgacttgagtcta 34429061  T
Q  632 tagatgtgcaaaatatttggttaatcccaaccaaatcaataaccaatcaattccaaaaattataccctatattcatacgtttgtatcttcatcttaacaa 731  Q
     ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||| || ||||||| ||||||    
T  34429060 cagacgtgcaaaatatttggttaatcccaaccaaatcaataaccagtcaattccaaaaattataccctatatccttacgtttataccttcatcctaacaa 34428961  T
Q  732 ataatacatgtaatattattgttgttgaatatatataa 769  Q
    |||||||||||||   ||||||||||||||||||||||    
T  34428960 ataatacatgtaa---tattgttgttgaatatatataa 34428926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 871 - 1045
Target Start/End: Complemental strand, 34428926 - 34428747
Alignment:
Q  871 aaataaattagatcttccatgtattttgattactacatcaaatccttttgatcgtgtaatttttagttcaaggagcctatattatcaaacaaggtt-gca 969  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  34428926 aaataaattagatcttccatgtattttgattactacatcaaatccttttgatcgtgtaatttttagttcaaggagcctatattatcaaacaaagttggca 34428827  T
Q  970 ccgccttaagtca---tcttcacaagctaatgtagcc-aaaacttagctaat-attcctttcctctagtatccttcaaaaa 1045  Q
    |||||||||||||   ||||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||    
T  34428826 ccgccttaagtcatcttcttcacaagctaatgtagccaaaaacttagctaataatttcttt-ctctagtatccttcaaaaa 34428747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 34679214 - 34679384
Alignment:
Q  9 gttatcgatctcaaaatatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacat 108  Q
    ||||| ||||| || |||||||||| |||||||||| |||| | |||||||||||  ||||||||||| || |||| |||  | |||||||||||||| |    
T  34679214 gttattgatcttaagatatttatacattttgaattataggtacgcgattcagctgcacaactccgagccacaggaggagtagtattgggagatgctactt 34679313  T
Q  109 tgggtgctatccacatccagaaaggagtggttgatcctcattttgtggtatgataacataatataatattt 179  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| || ||| |||||||    
T  34679314 tgggtgctatccacattcagaatggagttgttgatcctcattttgtggtatgataatatcatacaatattt 34679384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 34427714 - 34427538
Alignment:
Q  11 tatcgatctcaaaatatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacattg 110  Q
    |||||||||||| |||| |||| |||||||||||||||||   || ||   |||||||||||||||||| || |||||  |||||| |||||||||||||    
T  34427714 tatcgatctcaagatatatatattttttgaattaaaggtgtgtgactctattgttcaactccgagcaaccggggaagtagttttggaagatgctacattg 34427615  T
Q  111 ggtgctatccacatccagaaaggag----tggttgatcctcattttgtggtatgataacataatataatatttttgt 183  Q
    |||||||| ||||||||||| ||||    | ||||||||||||||||||||| ||||| |||||| |||||||||||    
T  34427614 ggtgctattcacatccagaagggagttgtttgttgatcctcattttgtggtaagataatataataaaatatttttgt 34427538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 18271531 - 18271709
Alignment:
Q  10 ttatcgatctcaaaatatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacatt 109  Q
    ||||| |||| || || |||||| ||||||||||| |||| | ||| || |||||||||||||||| ||  ||||||||| ||||||| ||||||||| |    
T  18271531 ttatctatctgaagatgtttatattttttgaattataggtacgcgactcggctgttcaactccgagtaaaaggagaagtggttttgggtgatgctacact 18271630  T
Q  110 gggtgctatccacatccagaaaggagtggttgatcctcattttgtggtatgataacataatataatatttttgtggatg 188  Q
     || |||||||||||||| || ||||| |||||||||||||||||||||||||||  |||||  ||||||| |||||||    
T  18271631 aggcgctatccacatccaaaagggagttgttgatcctcattttgtggtatgataatctaataagatattttagtggatg 18271709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 34686376 - 34686524
Alignment:
Q  15 gatctcaaaatatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacattgggtg 114  Q
    ||||| || ||||||||||||||||||||| ||||||  ||  | || |||||||| |||||||| ||||||||  |||| ||||||||||||||||||     
T  34686376 gatcttaatatatttatactttttgaattataggtgcgtgacgcggcagttcaacttcgagcaacaggagaagtagttttaggagatgctacattgggtt 34686475  T
Q  115 ctatccacatccagaaaggagtggttgatcctcattttgtggtatgata 163  Q
    |||| ||||| || || ||||| ||||||||||||||||||||||||||    
T  34686476 ctattcacattcaaaagggagttgttgatcctcattttgtggtatgata 34686524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 313 - 420
Target Start/End: Complemental strand, 34421160 - 34421053
Alignment:
Q  313 ttgtaggtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatg 412  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||| | |||| |||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  34421160 ttgtaggtggttaaagaagctttgttaaaaacaataaaggaagcatcgggggacaactggagcgaagaactaaatactgcttgggaaattgcttacgatg 34421061  T
Q  413 gattggca 420  Q
     |||||||    
T  34421060 aattggca 34421053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 34421513 - 34421363
Alignment:
Q  27 tttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacattgggtgctatccacatcc 126  Q
    |||||| ||| || |||| ||||||  ||| | ||||||||||| |||||||||||||||||  |||||||| || ||| | |||||||||||||||| |    
T  34421513 tttatattttctgtattataggtgcgtgatgcggctgttcaacttcgagcaactggagaagtagttttgggatatactaaagtgggtgctatccacattc 34421414  T
Q  127 agaaaggagtggttgatcctcattttgtggtatgataacataatataatat 177  Q
    | | |||||| ||||||||||||||||||||||||||| |||||| |||||    
T  34421413 aaagaggagttgttgatcctcattttgtggtatgataatataataaaatat 34421363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 319 - 444
Target Start/End: Complemental strand, 34426973 - 34426855
Alignment:
Q  319 gtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggattgg 418  Q
    ||||| |||||||||||||| ||||| |||||||||| |||||| | ||| ||||||       |||||||||||||| |||||||||||||||||||||    
T  34426973 gtggttaaagaagctttgttaaaaacaataaaggaagtagcaggagacaaatggagc-------taagtactgcttggaaagttgcttatgatggattgg 34426881  T
Q  419 cagcttcaattaagaaatcaatgagt 444  Q
    ||||||||||||||||| ||||||||    
T  34426880 cagcttcaattaagaaaacaatgagt 34426855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 27841343 - 27841197
Alignment:
Q  21 aaaatatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacattgggtgctatcc 120  Q
    ||||||||| ||  |||| ||||| ||||||  |||||||||  |||||| |||||||| || | |||  |||||||||||||| | |||||||||||||    
T  27841343 aaaatatttttaacttttaaattataggtgcgtgattcagcttctcaacttcgagcaacagggggagtagttttgggagatgctgcgttgggtgctatcc 27841244  T
Q  121 acatccagaaaggagtggttgatcctcattttgtggtatgataacat 167  Q
    |||| ||||| ||||| |||||||||||||||||||||||| |||||    
T  27841243 acattcagaagggagttgttgatcctcattttgtggtatgacaacat 27841197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 317 - 444
Target Start/End: Original strand, 34679490 - 34679617
Alignment:
Q  317 aggtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggatt 416  Q
    ||||||| |||||||||||| ||||||| ||||| ||| || |||| |  || |||||||||||| | || |||||||||||||| |||||||||| |||    
T  34679490 aggtggttaaagaagctttgctgaaaacaataaaagaatcatcaggagataaatggagcgaagaattgagcactgcttgggaagtagcttatgatgcatt 34679589  T
Q  417 ggcagcttcaattaagaaatcaatgagt 444  Q
    |||| || ||||||||||  ||||||||    
T  34679590 ggcaactgcaattaagaaggcaatgagt 34679617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 34650335 - 34650450
Alignment:
Q  46 aggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacattgggtgctatccacatccagaaaggagtggttgatcc 145  Q
    |||||| |||||||| ||||||||| |||||||| |  | |||  |||||| | || ||||||| ||||||||||||||| | || ||||| ||||||||    
T  34650335 aggtgcgcgattcaggtgttcaacttcgagcaacagagggagtagttttggaaaattctacattaggtgctatccacatctaaaagggagttgttgatcc 34650434  T
Q  146 tcattttgtggtatga 161  Q
    ||||||||||||||||    
T  34650435 tcattttgtggtatga 34650450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 224 - 444
Target Start/End: Complemental strand, 27840591 - 27840364
Alignment:
Q  224 aaatcaattactttacgataaatatttttcattcttgttaacatacctattttatgagagttaaatcactaaccca-------tgttttttgtgctttgt 316  Q
    |||| ||||| ||| | ||||||| ||| ||||  | |||||||||||||||||| || ||||||||||||| |||       ||||||| |||   |      
T  27840591 aaattaattagttttcaataaatactttccatttgtattaacatacctattttataagtgttaaatcactaatccaaagttaatgtttttggtgtcgtac 27840492  T
Q  317 aggtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggatt 416  Q
    ||||||| ||||| |||||| | || || ||||| ||||||||||| | ||| ||||| |||||||| || |||||||||||||| |||||||||| | |    
T  27840491 aggtggttaaagaggctttgctcaagacaataaaagaagcagcaggagacaaatggagtgaagaacttagcactgcttgggaagtagcttatgatgcact 27840392  T
Q  417 ggcagcttcaattaagaaatcaatgagt 444  Q
    |||| ||  |||||| ||| ||||||||    
T  27840391 ggcaactgaaattaaaaaagcaatgagt 27840364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 303 - 444
Target Start/End: Original strand, 34651102 - 34651243
Alignment:
Q  303 tttttgtgctttgtaggtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagtt 402  Q
    |||| |||| ||||||||||| ||||||||||| |||||||| |||||||||||| ||  ||  || ||||  |||||| | || ||||| ||| ||||     
T  34651102 ttttggtgccttgtaggtggttaaagaagctttattgaaaacaataaaggaagcatcaaaggataaatggaatgaagaattgaggactgcatggaaagta 34651201  T
Q  403 gcttatgatggattggcagcttcaattaagaaatcaatgagt 444  Q
    || ||||||| ||||||| |||||||||||||  ||||||||    
T  34651202 gcctatgatgcattggcaacttcaattaagaaggcaatgagt 34651243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 444
Target Start/End: Original strand, 34686684 - 34686811
Alignment:
Q  317 aggtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggatt 416  Q
    ||||||| |||||||||||| | ||||| || |||||||  |  || | ||| ||||| |||||||| || ||  |||||||||||||||||||||||||    
T  34686684 aggtggttaaagaagctttgctaaaaacaattaaggaagttgtgggagacaagtggagtgaagaacttagcacatcttgggaagttgcttatgatggatt 34686783  T
Q  417 ggcagcttcaattaagaaatcaatgagt 444  Q
    ||||  | ||||||||||| ||||||||    
T  34686784 ggcaagtgcaattaagaaagcaatgagt 34686811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 557 - 611
Target Start/End: Complemental strand, 27840244 - 27840190
Alignment:
Q  557 ttgtttgtgtttatgccggtgaatctcttagtcaaatacctaacaaaacccaagt 611  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  27840244 ttgttagtgtttatgtcggtgaatctcttagtcaaatccctaataaaacccaagt 27840190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 554 - 620
Target Start/End: Complemental strand, 34426741 - 34426675
Alignment:
Q  554 atattgtttgtgtttatgccggtgaatctcttagtcaaatacctaacaaaacccaagttcgaaagtg 620  Q
    |||||||| |||||||||    ||||||||||| |||||  ||||||||||||||||||| ||||||    
T  34426741 atattgttagtgtttatgttattgaatctcttactcaaaaccctaacaaaacccaagttcaaaagtg 34426675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 2067706 - 2067572
Alignment:
Q  24 atatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacattgggtgctatccaca 123  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| || | |||  ||||||||||||||||||||||||| |||||||    
T  2067706 atatttctactttttgaattataggtgcgcgattcagctgttcaactccgagcaacagggggagtagttttgggagatgctacattgggtgcaatccaca 2067607  T
Q  124 tccagaaaggagtggttgatcctcattttgtggta 158  Q
    | |||||||||||||||||||| ||||||||||||    
T  2067606 ttcagaaaggagtggttgatccacattttgtggta 2067572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 317 - 434
Target Start/End: Complemental strand, 2067275 - 2067158
Alignment:
Q  317 aggtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggatt 416  Q
    ||||||| |||||||||||| ||||||| |||||||||| | |||| |  || |||||||||||| | || |||||||||||||| || ||||||| |||    
T  2067275 aggtggttaaagaagctttgctgaaaacaataaaggaagtatcaggagataaatggagcgaagaattgagcactgcttgggaagtagcctatgatgcatt 2067176  T
Q  417 ggcagcttcaattaagaa 434  Q
    ||||||| ||||||||||    
T  2067175 ggcagctgcaattaagaa 2067158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 45160987 - 45160886
Alignment:
Q  317 aggtggtaaaagaagctttgttgaaaacgataaaggaagcagcagggggcaactggagcgaagaactaagtactgcttgggaagttgcttatgatggatt 416  Q
    ||||||| |||||||| ||| |||||||||| || ||||| ||||| | ||| || ||||||||| | ||||||||||||||||| |||||||||| |||    
T  45160987 aggtggttaaagaagcattgctgaaaacgatgaaagaagcggcaggagacaaatgaagcgaagaatttagtactgcttgggaagtagcttatgatgcatt 45160888  T
Q  417 gg 418  Q
    ||    
T  45160887 gg 45160886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 45161333 - 45161200
Alignment:
Q  25 tatttatactttttgaattaaaggtgcacgattcagctgttcaactccgagcaactggagaagtgattttgggagatgctacattgggtgctatccacat 124  Q
    |||||||  |||||||| || |||||   ||||||||||  |||||| || |||  ||||||||  |||||| ||||||||||||||||||||| || ||    
T  45161333 tatttatgatttttgaactataggtgtgtgattcagctgcacaactctgaacaaaaggagaagtagttttggaagatgctacattgggtgctattcatat 45161234  T
Q  125 ccagaaaggagtggttgatcctcattttgtggta 158  Q
     ||||| ||||| |||||||| ||||||||||||    
T  45161233 tcagaagggagttgttgatccacattttgtggta 45161200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University