View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3279-Insertion-5 (Length: 497)
Name: NF3279-Insertion-5
Description: NF3279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3279-Insertion-5 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 275 - 462
Target Start/End: Complemental strand, 9716496 - 9716309
Alignment:
| Q |
275 |
cttcctaacatcaaaagttattgacctttt-acaaaaagtttaatggattatgaatatcagtgttgtctcacctaagtccatgatggacatcaagggtaa |
373 |
Q |
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| T |
9716496 |
cttcctaacatcaaaagttgttgaactttttacaaagagtttaatggattatgaatat-agtgttgtcgcacctaagtccatgatggacattaagggtaa |
9716398 |
T |
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| Q |
374 |
acatgattaactaatatcatcttcttcattccctcgtttaactctaagcatcttccattcttgcatcttgtgcttttaattactctcga |
462 |
Q |
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| T |
9716397 |
acatgattaactaatatcatgttcttcattctctcgtttaactctaagcatcttccattcttgtatcttatgcttttaattactctcga |
9716309 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 9716653 - 9716559
Alignment:
| Q |
106 |
ttgtagtgttttaaagtgactaatattgtccttgtccattggctcatatacacaagtacttccattgtttcataataattctagcaaatcaatttttctc |
205 |
Q |
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| T |
9716653 |
ttgtagtgttataaagtgactaatattgtcc------attggctcatatacacaagtacttgctttgtttcataataattatagcaaacatatttttctc |
9716560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 34431 - 34504
Alignment:
| Q |
11 |
tgaaccaattgaatttctcatatcaaattctcttgttgtaagttctctattgttgctacagattgaagaattag |
84 |
Q |
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| T |
34431 |
tgaacctattgaatttctcatatcaacttctcttattgcaagctctctattgttgctatagattgaagaattag |
34504 |
T |
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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 37264898 - 37264985
Alignment:
| Q |
11 |
tgaaccaattgaatttctcatatcaaattctcttgttgtaagttctctattgttgctacagattgaagaattaggggtagtcgattgtgt |
100 |
Q |
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| T |
37264898 |
tgaacccattgaatttc--atatcaacttctcttattgcaagctctctattgttgctatagattgaagaattagaggaagtcgattgtgt |
37264985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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