View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3279R-Insertion-1 (Length: 844)
Name: NF3279R-Insertion-1
Description: NF3279R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3279R-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 564 - 818
Target Start/End: Complemental strand, 16263373 - 16263118
Alignment:
| Q |
564 |
tgatgtctgcagatataagatgattttttagccggtatcttatgatgaaacaaaactacaatgtttgaaagttgcatattttatctgtgttttttgcttc |
663 |
Q |
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| T |
16263373 |
tgatgtctgcagaaataagatgattttt-agccagtatcttatgatgaaacaaaactacaatgtttgaaacttgcatattttatctgtgctttttgcttc |
16263275 |
T |
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| Q |
664 |
cagttagaatgtaattgtgacactacattaacttttatatcatccacataattaactaggccaagtctcagtggtgaaactaccatcaaagaaactgaca |
763 |
Q |
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| T |
16263274 |
cggttagaatgtaattgtgacactgcattaacttttttgtgatccacagaattaattaggccaagtctcggtagtgaaactaccatcaaagaaacttaca |
16263175 |
T |
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| Q |
764 |
tattttttcttaattgtgtgttggaaattgcaggtatt-ggtga-gatgagaacaat |
818 |
Q |
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| T |
16263174 |
tattttttcttaattgtgtgttggaaattgcaagtattgggtgaggatgagaacaat |
16263118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 567 - 633
Target Start/End: Complemental strand, 39741055 - 39740990
Alignment:
| Q |
567 |
tgtctgcagatataagatgattttttagccggtatcttatgatgaaacaaaactacaatgtttgaaa |
633 |
Q |
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| T |
39741055 |
tgtctgcagatataagatgattttt-agccattatcttatgatgaaacaaaactacaatgtttgaaa |
39740990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 144 - 280
Target Start/End: Complemental strand, 51386303 - 51386167
Alignment:
| Q |
144 |
ggttgtgggtgattattgcaaaagtaacgtttttcatggtcgtggttgtcgaattttgtttttctggatatttaagtctggtggatttgaaatggctgta |
243 |
Q |
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| T |
51386303 |
ggttgtgggtgattattgctaaagtaacagttttcatggtcgtggttgtcgaattttgatttttttaatatttgagtttggtggatttgaaatggttgtg |
51386204 |
T |
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| Q |
244 |
aatactatgtgtttgtgaaattgcttgaatgagcaaa |
280 |
Q |
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| T |
51386203 |
agtactatgtgtttgtgaaaatttttgaatgagcaaa |
51386167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 567 - 633
Target Start/End: Complemental strand, 6897519 - 6897454
Alignment:
| Q |
567 |
tgtctgcagatataagatgattttttagccggtatcttatgatgaaacaaaactacaatgtttgaaa |
633 |
Q |
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| T |
6897519 |
tgtctgcagatataagatgattttt-agccattatcttatgatgaaacaaaactacaatgtttgaaa |
6897454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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