View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3279_high_3 (Length: 316)
Name: NF3279_high_3
Description: NF3279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3279_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 8422697 - 8422396
Alignment:
| Q |
1 |
ttgccatcttacattgctattcgagaagaggaccaaggctcctttgtgtataagaaatgtctaatatatgagaacaggtttccacatgatattgcagata |
100 |
Q |
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| T |
8422697 |
ttgccatcttacattgctattcgagaagaggaccaaggctcctttgtgtataagaaatgtctaatatatgagaacaggtttccacatgatattgcagata |
8422598 |
T |
|
| Q |
101 |
aaagcatatgctctaattcttgagctaaactcctcaaaccaaatatcaatccttgatacttgatcacaaaccctccaacttcaatgatcttgacttgata |
200 |
Q |
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| T |
8422597 |
aaagcatatgctctaattcttgagctaaactcctcaaaccaaatatcaatccttgatacttgatcacaaaccctccaacttcaatgatcttgacttgata |
8422498 |
T |
|
| Q |
201 |
ttcattcggctagttttacgaagatatcttcaactctaagctactccttcaaattccttcagatttgtatctacaagaaaattctaattgtatccctctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422497 |
ttcattcggctagttttacgaagatatcttcaactctaagctactccttcaaattccttcagatttgtatctacaagaaaattctaattgtatccctctg |
8422398 |
T |
|
| Q |
301 |
cc |
302 |
Q |
| |
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|| |
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| T |
8422397 |
cc |
8422396 |
T |
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