View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3279_low_1 (Length: 426)
Name: NF3279_low_1
Description: NF3279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3279_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 1461804 - 1461407
Alignment:
| Q |
17 |
acttcctgtttacacaaatcatacaatacaagcaaaaataaaacaagggaattcgttcaagtcggaaaggnnnnnnnnnnnnntagccgatatcatcttt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
1461804 |
acttcctgtttacacaaatcatacaatacaagcaaaaataaaacaagggaattcgttcaagtcggaaag----aaaaaaaaaatagctgatatcatcttt |
1461709 |
T |
|
| Q |
117 |
acttacctgataagcaacacctaacgatcgaagtccacgctcagcaaacctatcaatcaccgcatgagcccttttactcacattccctttgcagttacaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1461708 |
acttacctgataagcaacacctaacgatcgaagtccacgttcagcaaacctatcaatcaccgcatgagcccttttactcacattctctttgcagttacaa |
1461609 |
T |
|
| Q |
217 |
agcttcaatatctgaaataacataacatcatgtgttagttagtcatcttattaaacataacaaagataacaccagggtctagcgtgagtggttgatgctc |
316 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1461608 |
agctccaatatctgaaataacataacatcatgtcttagttagtcatcttattaaacataacaaagataacaccagggtctagcgtaagtggttgatgctc |
1461509 |
T |
|
| Q |
317 |
atagtgtgtgagtgttgtaaaccttggaattcaattcctattgataaagaaaacacataacaagttgaaactcatatctacctgttcaggagcccctttg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1461508 |
atagtgtgtgagtgttgtaaaccttggaattcaattcctattgataaagaaaacacataacaagttgaaactcatatctacctgttcaggagcccctttg |
1461409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 1497687 - 1497740
Alignment:
| Q |
130 |
gcaacacctaacgatcgaagtccacgctcagcaaacctatcaatcaccgcatga |
183 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
1497687 |
gcaacacctaaagatcgaagtccacgctccgcaaacttatcaatcactgcatga |
1497740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 1497585 - 1497621
Alignment:
| Q |
26 |
ttacacaaatcatacaatacaagcaaaaataaaacaa |
62 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1497585 |
ttacacaaatcatacaatacaagcaattataaaacaa |
1497621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 26789291 - 26789084
Alignment:
| Q |
17 |
acttcctgtttacacaaatcatacaatacaagcaaaaataaaacaagggaattcgttcaagtcggaaaggnnnnnnnnnnnnntagccgatatcatcttt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||| |||||||||||| |
|
|
| T |
26789291 |
acttcctgtt-acacaaatcatacaatacaagaaaaaataaaacaagggaattcgttcaagtagaaaa--------ctaaacatagctgatatcatcttt |
26789201 |
T |
|
| Q |
117 |
acttacctgataagcaacacctaacgatcgaagtccacgctcagcaaacctatcaatcaccgcatgagcccttttactcacattccctttgcagttacaa |
216 |
Q |
| |
|
|||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
26789200 |
acttacctgacaagcaacaccgagcgatcgaagtccacgctcagcaaacctatcaatcactgcatgaacccttttcctcacattctctttgcagttacaa |
26789101 |
T |
|
| Q |
217 |
agcttcaatatctgaaa |
233 |
Q |
| |
|
|| | |||||||||||| |
|
|
| T |
26789100 |
agttccaatatctgaaa |
26789084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 26789036 - 26788988
Alignment:
| Q |
370 |
cacataacaagttgaaactcatatctacctgttcaggagcccctttgct |
418 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26789036 |
cacataacaagttgaaactcatatttacctgttcaggagcccctttgct |
26788988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University