View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3279_low_2 (Length: 402)
Name: NF3279_low_2
Description: NF3279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3279_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 47837166 - 47837539
Alignment:
| Q |
9 |
tttctcattaatttgttcttgttgaaatacatgggaatgctttgtgtgttatggttgatatatatgtacttatagtggagggttttctttcttagcaccc |
108 |
Q |
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| T |
47837166 |
tttctcattaatttgttcttattgaaatacatgggaatgctttgtgtgttatggttgatatatatgtacttttggtggagggttttctttcttagcatcc |
47837265 |
T |
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| Q |
109 |
aagaacatgaattactacagaattattaggtcgttgagtattattgatcaaaggagagacaaaaatatgtaaataactaacgagtcaaatataatatata |
208 |
Q |
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| T |
47837266 |
aagaacatgaattactacagaattattaggtcgttgagtattattgatcaaaggagagacaaaaatatataaataactaacgagtcaaatataatatata |
47837365 |
T |
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| Q |
209 |
attggtcaaatctcgggttaggtatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattgcctacatagatagatagatagatcaccccc |
308 |
Q |
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| T |
47837366 |
attggtcaaa--tcgggttaggtatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattggctagatagatagatagatagatcaccccc |
47837463 |
T |
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| Q |
309 |
tattctatgctatagctgc-----ctgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat |
379 |
Q |
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| T |
47837464 |
tattctatgctatagctgcctgtactgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat |
47837539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 2614755 - 2614727
Alignment:
| Q |
374 |
ttatatggaaaatgttacatgaacaccct |
402 |
Q |
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| T |
2614755 |
ttatatggaaaatgttacatgaacaccct |
2614727 |
T |
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