View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3279_low_6 (Length: 233)

Name: NF3279_low_6
Description: NF3279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3279_low_6
NF3279_low_6
[»] chr7 (3 HSPs)
chr7 (20-164)||(36363641-36363785)
chr7 (20-119)||(39931491-39931589)
chr7 (171-217)||(36363778-36363824)
[»] chr6 (2 HSPs)
chr6 (20-155)||(5041633-5041770)
chr6 (25-107)||(33185559-33185639)
[»] chr2 (2 HSPs)
chr2 (23-162)||(37445221-37445360)
chr2 (57-162)||(37437141-37437245)
[»] chr3 (1 HSPs)
chr3 (23-110)||(31742379-31742465)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 36363641 - 36363785
Alignment:
Q  20 tgagcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcc 119  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36363641 tgagcatgctcctgagatgtcaacatgtcataaacaccacgaacggaataacccccctatcgggtccaaatgccactgccacacatcagaaatggtatcc 36363740  T
Q  120 tacaaagaaatggtaagtagtaatgccctacactcccctagcagc 164  Q
    | ||||||||  ||||||| |||||||||||||||| ||||||||    
T  36363741 tgcaaagaaacagtaagtaataatgccctacactcctctagcagc 36363785  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 39931589 - 39931491
Alignment:
Q  20 tgagcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcc 119  Q
    ||||||||||||||| |||||| ||||||||| ||||||| ||||||||||| |||||||  ||||||| ||||| | ||| ||||||||||||||||||    
T  39931589 tgagcatgctcctgatatgtcagcatgtcatagacaccacgaacggaataac-cccctattaggtccaagtaccagtaccaaacatcagaaatggtatcc 39931491  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 36363778 - 36363824
Alignment:
Q  171 ctagcagctcttactcccacaaccacaaactatgacaccacctccac 217  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||    
T  36363778 ctagcagctcttcctcccacacccacaaactatgacgccacctccac 36363824  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 5041633 - 5041770
Alignment:
Q  20 tgagcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcc 119  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| || |||||| |||||||||||||||||||||    
T  5041633 tgagcatgctcttgagatgtcaacatgtcataaacaccacgaacagaataacccccctatcaggtccagatgccactgtcacacatcagaaatggtatcc 5041732  T
Q  120 --tacaaagaaatggtaagtagtaatgccctacactcc 155  Q
      ||||||||||| || |||||||||||||||||||||    
T  5041733 tatacaaagaaattgtcagtagtaatgccctacactcc 5041770  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 33185559 - 33185639
Alignment:
Q  25 atgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatca 107  Q
    ||||||||  ||||||||||||||||||||||||  |||||| ||||||| |  |||| ||||||  ||||||||||| ||||    
T  33185559 atgctcctatgatgtcaacatgtcataaacaccatgaacggagtaaccccac--tcggatccaaaagccactgccacatatca 33185639  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 37445221 - 37445360
Alignment:
Q  23 gcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcctac 122  Q
    |||||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||| |||||||| ||||| || || |||||||   || ||||||    
T  37445221 gcatgctcttgggatgtcagcatgtcataaacaccgcaaatggaataacccccctatcgcgtccaaatgccactaccgcatatcagaagaagtttcctac 37445320  T
Q  123 aaagaaatggtaagtagtaatgccctacactcccctagca 162  Q
    |||||||    | |||||||||||||||||||| ||||||    
T  37445321 aaagaaacatcatgtagtaatgccctacactccactagca 37445360  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 37437141 - 37437245
Alignment:
Q  57 cacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaaatggtatcctacaaagaaatggtaagtagtaatgccctacactccc 156  Q
    ||||||||||||||||||   ||||||| ||||| ||||||||||| ||||||| | || |||||||| ||||    | ||||||| ||||||| ||||     
T  37437141 cacaaacggaataaccccta-atcgggttcaaatgccactgccacatatcagaagtagtgtcctacaatgaaacatcatgtagtaacgccctaccctccg 37437239  T
Q  157 ctagca 162  Q
    ||||||    
T  37437240 ctagca 37437245  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 31742379 - 31742465
Alignment:
Q  23 gcatgctcctgagatgtcaacatgtcataaacaccacaaacggaataacccccctatcgggtccaaataccactgccacacatcagaa 110  Q
    ||||||||||  ||||||| |||||||| |||||||| |||||||||| ||||||| |||||||||||  |||||||||| |||||||    
T  31742379 gcatgctcctatgatgtcagcatgtcatcaacaccacgaacggaataa-ccccctaccgggtccaaatgtcactgccacatatcagaa 31742465  T

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