View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3280_low_1 (Length: 542)
Name: NF3280_low_1
Description: NF3280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3280_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Complemental strand, 6458433 - 6457919
Alignment:
| Q |
12 |
tcatcaaatcctcaaactcctccctctccctctgctaccctacttgcacctccaacgcttctttcatagctcaagtcttcgaccctgatatcactatttc |
111 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6458433 |
tcatcaaatcctcaaacttctccctctccctctgctaccctacttgcacctccaacgcttctttcatagctcaagtcttcgaccctgatatcactatttc |
6458334 |
T |
|
| Q |
112 |
tacctccatgaaaacaaaccaagactcacatgaaaaacatgtgatctcttccttcagtgatctcggtgtcactttggacattcccttgtctaacctgcgg |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6458333 |
tacctccatgaaaacaaaccaagactcacatgaaaaacatgtgatctcttccttcagtgatctcggtgtcactttggacattcccttgtctaacctgcgg |
6458234 |
T |
|
| Q |
212 |
ttcttcctcgtaagaggaagcccttttgtgacagcgtcagtaaccaaccgtacgccactttccatcaccaccatacattccatcctttcattctcatcca |
311 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6458233 |
ttcttcctcgtaagaggaagcccttttgtgacagtgtcagtaaccaaccgtacgccactttccatcaccaccatacattccatcctttcattctcatcca |
6458134 |
T |
|
| Q |
312 |
ataattccctcaccaagcacaatttgcagctcaacaatggccaaacatggctcatttacacatcgtccccggtaagtttcagtaatagcctttctgagat |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6458133 |
ataattccctcaccaagcacaatttgcagctcaacaatggccaaacatggctcatttacacatcgtccccggtaagtttcagtaatagcctttctgagat |
6458034 |
T |
|
| Q |
412 |
tacctctgaaggctattctggcataataaggatggcagtattacctgattctgatcccaagtacgaggtaatccttaaccggttcagttcttgttaccct |
511 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6458033 |
tacctctgaaggctattctggcataataaggatggcagtattacctgattctgatcccaagtacgaggtaatccttaaccggttcagttcttgttaccct |
6457934 |
T |
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| Q |
512 |
acttctggtgatgca |
526 |
Q |
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||||||||||||||| |
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| T |
6457933 |
acttctggtgatgca |
6457919 |
T |
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