View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3280_low_4 (Length: 328)
Name: NF3280_low_4
Description: NF3280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3280_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 5680515 - 5680358
Alignment:
| Q |
19 |
tctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccattaatattgtgctctccaagttcaactagataaacct |
118 |
Q |
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| T |
5680515 |
tctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatctcctttaatattgttctctccaagttcaactagataaacct |
5680416 |
T |
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| Q |
119 |
gtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
176 |
Q |
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| T |
5680415 |
gtgagaaaatttcatcaaaagatgtttcacttgagactaagagttacaaataagagca |
5680358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 5689825 - 5689719
Alignment:
| Q |
19 |
tctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccattaatattgtgctctccaagttcaactagataaacct |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||| ||||||||||||| |
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| T |
5689825 |
tcttttaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatgtccat---tattgtgctctccaaattccactagataaacct |
5689729 |
T |
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| Q |
119 |
gtgagaaaat |
128 |
Q |
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| T |
5689728 |
gtgagaaaat |
5689719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 5680292 - 5680215
Alignment:
| Q |
242 |
cctgattattattggtgcatgacaccaatggaagaaggaggaggaggaggaagagacatgttgtggaaatgatgatgt |
319 |
Q |
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| T |
5680292 |
cctgattattattggtgcatgacaccaatggaagaaggagcaggaggaggaagagacatgttgtggaaatgatgatgt |
5680215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 5689642 - 5689598
Alignment:
| Q |
242 |
cctgattattattggtgcatgacaccaatggaagaaggaggagga |
286 |
Q |
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| T |
5689642 |
cctgattatttttggtgcatgagaccaatggaagaaggagaagga |
5689598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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