View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3280_low_5 (Length: 278)
Name: NF3280_low_5
Description: NF3280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3280_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 138 - 278
Target Start/End: Original strand, 3351759 - 3351899
Alignment:
| Q |
138 |
gagaagtgaagtttgtggaaggaggaatatatgcaaaggtcacattgtcatacaattgtggaaggagggatatatgcaaaggcactagcataccattatt |
237 |
Q |
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| T |
3351759 |
gagaagtgaagtttgtggaaggaggaatatatgcaaaggtcacattgtcatacaattgtggaaggagggatatatgcaaaggcactagcataccattatt |
3351858 |
T |
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| Q |
238 |
ttgttcttatcaaaatcgcacttctaatgtttgaggaagac |
278 |
Q |
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| T |
3351859 |
ttgttcttatcaaaatcgcacttctaatgtttgagaaagac |
3351899 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 3351612 - 3351694
Alignment:
| Q |
55 |
tatggtgttcaattactagatgtcaacttttttatatttacctacaaaagatttccagcaatatatgtcaaatttctaaggat |
137 |
Q |
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| T |
3351612 |
tatgttgttcaattactagatgtcaacttttttatatttacctacaaaagatttccagcaatatatgtcaaatttctaaggat |
3351694 |
T |
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