View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3280_low_6 (Length: 244)
Name: NF3280_low_6
Description: NF3280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3280_low_6 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 3352367 - 3352140
Alignment:
| Q |
17 |
aggaaacatgtcagcaattttcttagggcctgagattattttggcgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3352367 |
aggaaacatgtcagcaattttcttagggcctgagattattttgacgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatg |
3352268 |
T |
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| Q |
117 |
aatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3352267 |
aatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcc |
3352168 |
T |
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| Q |
217 |
catacaaaatcttatcgttgccagttcc |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
3352167 |
catacaaaatcttatcgttgccagttcc |
3352140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 42046227 - 42046446
Alignment:
| Q |
17 |
aggaaacatgtcagcaattttcttagggcctgagattattttggcgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatg |
116 |
Q |
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|||||||| |||||||||||| ||||| || ||||||| |||| |||||| |||||||| ||||||||||| ||||||||||| ||||||| ||||||| |
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| T |
42046227 |
aggaaacacgtcagcaatttttttaggaccggagattaatttgtcgttgcaagagtatggagcatagtctattagagcacaaaaattttcatgaaagatg |
42046326 |
T |
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| Q |
117 |
aatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcc |
216 |
Q |
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| T |
42046327 |
aatgcctggttgttatcggtgtcaaatgcacaatcaattgcatagctttgaaatattgtaggagcaagtgatttaaacccatcactaacaagagatggcc |
42046426 |
T |
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| Q |
217 |
catacaaaatcttatcgttg |
236 |
Q |
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||| |||||||||||||||| |
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| T |
42046427 |
catgcaaaatcttatcgttg |
42046446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 14452648 - 14452440
Alignment:
| Q |
17 |
aggaaacatgtcagcaattttcttagggcctgagattattttggcgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatg |
116 |
Q |
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|||||||||||| |||||||||||||| || | |||||||||| | ||| | |||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14452648 |
aggaaacatgtcggcaattttcttaggaccagtgattattttgtctttgtcggagtgtggtgcatagtctatgagagcacaaaaattttcataaaagatg |
14452549 |
T |
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| Q |
117 |
aatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcc |
216 |
Q |
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||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||| ||||||||| ||||| |||| ||||| || |||||| | |||| |
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| T |
14452548 |
aatgcctcgttgttatcggtgtcaaaggcacaatcaattccatagcttccaaatattgtatgagcatgtgatttaaaaccatcacggacaagagtaggcc |
14452449 |
T |
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| Q |
217 |
catacaaaa |
225 |
Q |
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||||||||| |
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| T |
14452448 |
catacaaaa |
14452440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 42471414 - 42471604
Alignment:
| Q |
17 |
aggaaacatgtcagcaattttcttagggcctgagattattttggcgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatg |
116 |
Q |
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|||||||||||||| ||| ||||||| || |||||||||||| | | | || | || |||||||||||||||||||||| |||||||||||| ||| |
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| T |
42471414 |
aggaaacatgtcagagattatcttaggacccgagattattttgtcttcatctgactgcggagcatagtctatgagagcacaaaggttttcataaaatatg |
42471513 |
T |
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| Q |
117 |
aatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaa |
207 |
Q |
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||||| | | ||||||| |||| ||||| |||||| ||||||||||||||||||| ||||||||||||||| | |||||||| ||||||| |
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| T |
42471514 |
aatgcctaggtgttatccgtgtcaaaggcacaatcaattccatagcttccaaatacggtatgagcaagtgaacggaacccatcacgaacaa |
42471604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 63417 - 63637
Alignment:
| Q |
17 |
aggaaacatgtcagcaattttcttagggcctgagattattttggcgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatg |
116 |
Q |
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||||||||| || ||||||||| ||| ||||||||||||||| | ||| | | || ||| | ||| ||||| |||||||| || |||||||| | |
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| T |
63417 |
aggaaacatttccgcaattttcatagaacctgagattattttgtctttgtcagtgtgtggagtatattctatcttagcacaaagaccttgataaaagacg |
63516 |
T |
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| Q |
117 |
aatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcc |
216 |
Q |
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|| || || |||| |||||||| ||||| |||||||||||||| |||||||||| |||||| | |||| ||| |||||||| |||||||| | | || | |
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| T |
63517 |
aacgcctcattgtcatcggtgtcaaaggcacaatctattccattgcttccaaatttggtattatcaagcgatggaaacccatggcgaacaaaaataggtc |
63616 |
T |
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| Q |
217 |
catacaaaatcttatcgttgc |
237 |
Q |
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|||| |||||||||||||||| |
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| T |
63617 |
catataaaatcttatcgttgc |
63637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 37361 - 37581
Alignment:
| Q |
17 |
aggaaacatgtcagcaattttcttagggcctgagattattttggcgttgcccgagtatggtgcatagtctatgagagcacaaaagttttcataaaagatg |
116 |
Q |
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||||||||| || ||||||||| |||| ||||||||||||||| | ||| | | | ||| |||| ||||| |||||||| || |||||||| | |
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| T |
37361 |
aggaaacatttccgcaattttcataggacctgagattattttgtctttgtcagtttgtggaacatattctatcttagcacaaagaccttgataaaagacg |
37460 |
T |
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| Q |
117 |
aatgcttcgttgttatcggtgttaaaggaacaatctattccatagcttccaaatatggtatgagcaagtgatctaaacccatcgcgaacaagactcggcc |
216 |
Q |
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|| || ||||||| |||||||| ||||| |||||||||||||| |||||||||| | |||| | |||| ||| |||||| | |||||||| | || | |
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| T |
37461 |
aacgcctcgttgtcatcggtgtcaaaggcacaatctattccattgcttccaaattttgtattatcaagcgatggaaacccgtggcgaacaaaaacaggtc |
37560 |
T |
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| Q |
217 |
catacaaaatcttatcgttgc |
237 |
Q |
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||| |||||||||||||||| |
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| T |
37561 |
catgtaaaatcttatcgttgc |
37581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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