View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3280_low_7 (Length: 240)

Name: NF3280_low_7
Description: NF3280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3280_low_7
NF3280_low_7
[»] chr4 (2 HSPs)
chr4 (14-133)||(13336088-13336207)
chr4 (196-224)||(13335997-13336025)
[»] chr8 (2 HSPs)
chr8 (14-133)||(4462674-4462793)
chr8 (196-224)||(4462583-4462611)
[»] chr1 (2 HSPs)
chr1 (29-133)||(36380884-36380992)
chr1 (196-224)||(36381055-36381083)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 13336207 - 13336088
Alignment:
Q  14 agactaagagagggaggagtacgacggagattacgggaagggatggatggtgagaggaaggagtacgacggagacggagatatgaacagaaaaagtggaa 113  Q
    ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13336207 agactcagagagggaggagtacggcggagattatgggaagggatggatggtgagaggaaggagtacgacggagacggagatatgaacagaaaaagtggaa 13336108  T
Q  114 cttgggtcttgctgtgatta 133  Q
    ||||||||||||||||||||    
T  13336107 cttgggtcttgctgtgatta 13336088  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 13336025 - 13335997
Alignment:
Q  196 aaaattaacaacattcacagctacaaaac 224  Q
    |||||||||||||||||||||||||||||    
T  13336025 aaaattaacaacattcacagctacaaaac 13335997  T

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Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 4462793 - 4462674
Alignment:
Q  14 agactaagagagggaggagtacgacggagattacgggaagggatggatggtgagaggaaggagtacgacggagacggagatatgaacagaaaaagtggaa 113  Q
    ||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  4462793 agactcagagagggaggagtatggcggagattacgggaaggaatggatggtgagagggaggagtacgacggagacggagatatgaacagaaaaagaggaa 4462694  T
Q  114 cttgggtcttgctgtgatta 133  Q
    ||||||||||||||||||||    
T  4462693 cttgggtcttgctgtgatta 4462674  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 4462611 - 4462583
Alignment:
Q  196 aaaattaacaacattcacagctacaaaac 224  Q
    |||||||||||||||||||||||||||||    
T  4462611 aaaattaacaacattcacagctacaaaac 4462583  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 36380884 - 36380992
Alignment:
Q  29 ggagtacgacggagattacgggaagggatggatggtgagaggaaggagtacgacggagacggagatatgaacagaaaaagtggaacttggg----tcttg 124  Q
    ||||||||  |||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||    |||||    
T  36380884 ggagtacggtggagattacgagaagggatggatgttgagagggaggagtacgacggagacggagatatgaacagaaaaggaggaacttgggtgggtcttg 36380983  T
Q  125 ctgtgatta 133  Q
    |||||||||    
T  36380984 ctgtgatta 36380992  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 36381055 - 36381083
Alignment:
Q  196 aaaattaacaacattcacagctacaaaac 224  Q
    |||||||||||||||||||||||||||||    
T  36381055 aaaattaacaacattcacagctacaaaac 36381083  T

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