View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3281_low_1 (Length: 436)
Name: NF3281_low_1
Description: NF3281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3281_low_1 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 14180664 - 14180257
Alignment:
| Q |
19 |
gtatgtgcatatacaaatccagattcaaattcaaaaggtggtaataacattagtaggagtaaatattcttacccagttggataaattcatgttttcatct |
118 |
Q |
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| T |
14180664 |
gtatgtgcatatacaaatccagattcaaattcaaaaggtggtaataacattagtaggagtaaatattcttacccagttggataaattcatgttttcatct |
14180565 |
T |
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| Q |
119 |
tgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtctattaatgatcaatgatataggtgagtacctatatgttaattaaagag |
218 |
Q |
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| T |
14180564 |
tgcaagattctttcctgaatcacaacatatatacaattattaatgatgtgtctattaatgatcaatgatataggtgagtacctatatgttaattaaagag |
14180465 |
T |
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| Q |
219 |
atatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtattaaaaataatgtgtcaataatttgtg |
318 |
Q |
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| T |
14180464 |
atatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtattgaaaataatgtgtcaataatttgtg |
14180365 |
T |
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| Q |
319 |
ttgaatgataatcacgaaaattaaaagagataggagtaatattgattaaaattaacaagaagtactctgatctaattacatagaaaattaatacacccaa |
418 |
Q |
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| T |
14180364 |
ttgaatgataatcacgaaaattaaaagagataggaataatattgattaaaattaacaagaagtactctgatctaattacatagaaaattaatacacccaa |
14180265 |
T |
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| Q |
419 |
tccctatg |
426 |
Q |
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| T |
14180264 |
tccctatg |
14180257 |
T |
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Target: scaffold0009 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 96 - 339
Target Start/End: Original strand, 95345 - 95571
Alignment:
| Q |
96 |
tggataaattcatgttttcatcttgcaagattctttcctgaatcacaa---catatatacaattattaatgatgtgtctattaatgatcaatgatatagg |
192 |
Q |
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| T |
95345 |
tggataaattgatattttcatcttgcaagattctttcctgaatcacaataacatatatacaattatggatcatgtgtctattaatagtcaatgat----- |
95439 |
T |
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| Q |
193 |
tgagtacctatatgttaattaaagagatatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtat |
292 |
Q |
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| T |
95440 |
---------------taactaaagagagggttagtttaattatatatgtcaccttcctgatcatattatcaatttgctgctgcatgagctcattctgcat |
95524 |
T |
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| Q |
293 |
taaaaataatgtgtcaataatttgtgttgaatgataatcacgaaaat |
339 |
Q |
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| T |
95525 |
taaaaataatgtgtcaataatttgtgttgaaggatagtcatgaaaat |
95571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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