View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3281_low_4 (Length: 218)
Name: NF3281_low_4
Description: NF3281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3281_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 38643184 - 38643331
Alignment:
| Q |
20 |
atgaaatagtgagtagtagtattttagtaattcaacagaaacacaaggcttcttaaatataaatcacatgttaccatagctggcagcatatgaatcctac |
119 |
Q |
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| T |
38643184 |
atgaaatagtgagtagtagtattttagtaattcaacaaaaacacaaggcttcttaaatataaatcacatgttaccatagctggcagcatatgaatcctac |
38643283 |
T |
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| Q |
120 |
attctcatccactgagcctgtcataaaagctagtacttagttgttagt |
167 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38643284 |
attctcatccactgagcctgtcataaaagctagtacttagttgttagt |
38643331 |
T |
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