View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282-Insertion-10 (Length: 876)

Name: NF3282-Insertion-10
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282-Insertion-10
NF3282-Insertion-10
[»] chr1 (7 HSPs)
chr1 (7-530)||(14424335-14424861)
chr1 (192-521)||(75362-75691)
chr1 (640-741)||(28411494-28411594)
chr1 (587-670)||(33175519-33175602)
chr1 (700-773)||(15297626-15297699)
chr1 (587-661)||(23420510-23420583)
chr1 (591-661)||(23506767-23506837)
[»] chr3 (6 HSPs)
chr3 (59-520)||(28312886-28313343)
chr3 (59-327)||(19292255-19292525)
chr3 (241-429)||(13394746-13394934)
chr3 (583-798)||(21828066-21828282)
chr3 (345-469)||(19292128-19292252)
chr3 (58-90)||(13395083-13395115)
[»] chr5 (3 HSPs)
chr5 (615-795)||(7741229-7741410)
chr5 (587-773)||(18179214-18179399)
chr5 (589-657)||(20695923-20695991)
[»] chr4 (5 HSPs)
chr4 (264-470)||(18779483-18779688)
chr4 (579-775)||(21048242-21048436)
chr4 (297-382)||(1003490-1003575)
chr4 (623-726)||(33520106-33520209)
chr4 (449-522)||(1003319-1003392)
[»] chr8 (7 HSPs)
chr8 (587-661)||(6887085-6887159)
chr8 (672-798)||(8541700-8541827)
chr8 (669-760)||(28290312-28290404)
chr8 (588-661)||(14140203-14140276)
chr8 (700-796)||(27084551-27084647)
chr8 (587-670)||(35134470-35134553)
chr8 (700-800)||(28259523-28259624)
[»] chr6 (2 HSPs)
chr6 (583-731)||(21604669-21604816)
chr6 (617-717)||(26498761-26498860)
[»] chr2 (6 HSPs)
chr2 (198-407)||(17554844-17555053)
chr2 (207-349)||(13040596-13040738)
chr2 (579-659)||(24438561-24438641)
chr2 (7-126)||(30348269-30348388)
chr2 (582-640)||(25461225-25461283)
chr2 (346-407)||(30348577-30348638)
[»] scaffold0050 (1 HSPs)
scaffold0050 (92-388)||(20209-20507)
[»] chr7 (4 HSPs)
chr7 (186-313)||(7405203-7405330)
chr7 (587-727)||(22334185-22334324)
chr7 (587-727)||(6724122-6724262)
chr7 (588-661)||(11466937-11467010)
[»] scaffold1587 (1 HSPs)
scaffold1587 (588-633)||(805-850)


Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Complemental strand, 14424861 - 14424335
Alignment:
Q  7 aggatttctttgttgcctcgtgtacacacccatgtattttacttgcttcttggataaccccaaacttgctggaagacatgcactacttttatgagattgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14424861 aggatttctttgttgcctcgtgtacacacccatgtattttacttgcttcttggataaccccaaactttctggaagacatgcactacttttatgagattgc 14424762  T
Q  107 tcaaaaaagtcataacttac--cattttttgacaactttgccacgttttacgcttccaacttcttggttagtgcttcgattttgttgctaagaagtttgt 204  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14424761 tcaaaaaagtcataacttacaccattttttgacaactttgccacgttttacgcttccaacttcttggctagtgcttcgattttgttgctaagaagtttgt 14424662  T
Q  205 ttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcgtt-caaggaca 303  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14424661 ttcttgctattaatgcatcatgcatttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcgtttcaaggaca 14424562  T
Q  304 tgttatcaatgagctcttggatttctgttgcaattttgttcttcatggtaccttcagttgatgcgtctaagagcatgcaggttgttggcttaagaccata 403  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14424561 tgttatcaatgagctcttggatttctattgcaattttgttcttcatggtaccttcagttgatgcgtctaagagcatgcaggttgttggcttaagaccata 14424462  T
Q  404 tgtgtaagtcaatgcaatctccatttttgaaaacgtaagcctgagacaacgcttgagtagtaacttgtatttcttctatgcatcatagagattctctcca 503  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14424461 tgtgaaagtcaatgcaatctccatttttgaaaacttatgcctgagacaacgcttgagtagtaacttgtatttcttctatgcatcatagagattctctcca 14424362  T
Q  504 tcttcttgttgaaaaccggaaatctcc 530  Q
    |||||||||||||||||||||||||||    
T  14424361 tcttcttgttgaaaaccggaaatctcc 14424335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 192 - 521
Target Start/End: Original strand, 75362 - 75691
Alignment:
Q  192 ctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaaatact 291  Q
    ||||| |||||||| ||| | | ||| |||||||| |||| |||  || ||||||| |||||||| ||||||||| ||| |||||||| |||   ||||     
T  75362 ctaaggagtttgttgcttaccagtaaggcatcatgagttttcaaacttagaactccctgcttctttacaacacccatattctcgctttaaggacgataca 75461  T
Q  292 cgttcaaggacatgttatcaatgagctcttggatttctgttgcaattttgttcttcatggtaccttcagttgatgcgtctaagagcatgcaggttgttgg 391  Q
    |||| ||||||||||| || |||| |||| |||||  ||||||| ||||| |||||||||||||| | |||||||| ||||| ||||||   ||| |||     
T  75462 cgtttaaggacatgttttctatgaactctcggattcatgttgcagttttgctcttcatggtacctcctgttgatgcatctaaaagcatgagcgttattga 75561  T
Q  392 cttaagaccatatgtgtaagtcaatgcaatctccatttttgaaaacgt-aagcctgagacaacgcttgagtagtaacttgtatttcttctatgcatcata 490  Q
    |||   ||||| | || ||||||||| ||| ||||| | ||||||  |  |  ||| ||||||||||||| |||||||||||  ||| | ||||||| ||    
T  75562 cttctaaccatctttgaaagtcaatgaaatttccatctctgaaaatttgtactctg-gacaacgcttgaggagtaacttgtacctctccaatgcatccta 75660  T
Q  491 gagattctctccatcttcttgttgaaaaccg 521  Q
    |||||| ||| | |||| |||||| ||||||    
T  75661 gagattttcttcgtctttttgttggaaaccg 75691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 640 - 741
Target Start/End: Complemental strand, 28411594 - 28411494
Alignment:
Q  640 taattagcggaatttattagaattaactaaatttaaaagagatgaagttgtttgcagggatttaattgttttgcccaatgcgagattaaattttgtgatt 739  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||||| ||||| || | |||||||||| |||| ||||| | |||| ||||| |||||    
T  28411594 taattagcggaatttattagaaataacaaaatt-aaaagagatgaagtggtttgtagtgttttaattgttgtgcctaatgcaaaattagattttatgatt 28411496  T
Q  740 ca 741  Q
    ||    
T  28411495 ca 28411494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 587 - 670
Target Start/End: Original strand, 33175519 - 33175602
Alignment:
Q  587 caagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaa 670  Q
    ||||||||||| ||||||| |||| || |||||| |||||||||| ||| | | |||||| |||||||||||||| ||| ||||    
T  33175519 caagtaataaaatagtaagttatcttctccacatagattgtcgttcaacttagcaattagaggaatttattagaagtaaataaa 33175602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 700 - 773
Target Start/End: Original strand, 15297626 - 15297699
Alignment:
Q  700 tttaattgttttgcccaatgcgagattaaattttgtgattcagaaatataacgtcgattagaaaatccttgaat 773  Q
    |||||||||  |||||||||||||||||  ||||||||||||||  |||||||  ||||||  |||||||||||    
T  15297626 tttaattgtactgcccaatgcgagattaggttttgtgattcagaggtataacgatgattagggaatccttgaat 15297699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 587 - 661
Target Start/End: Original strand, 23420510 - 23420583
Alignment:
Q  587 caagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaa 661  Q
    ||||||||||| ||||||| ||||||| ||||| ||||||||||| ||| | | ||||| | |||||||||||||    
T  23420510 caagtaataaagtagtaagttatcgtctccacaaggattgtcgttcaacttagcaattaac-gaatttattagaa 23420583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 591 - 661
Target Start/End: Complemental strand, 23506837 - 23506767
Alignment:
Q  591 taataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaa 661  Q
    ||||||| ||||||| ||||||| | |||  || ||||||| ||| ||||||||||| |||||||||||||    
T  23506837 taataaagtagtaagttatcgtctctacagtgaatgtcgttcaacttggtaattagcagaatttattagaa 23506767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 9e-54; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 59 - 520
Target Start/End: Complemental strand, 28313343 - 28312886
Alignment:
Q  59 gataaccccaaacttgctggaagacatgcactacttttatgagattgctcaaaaaagtcataactt--accattttttgacaactttgccacgttttacg 156  Q
    ||||||| |||||||| |||||||||||||| ||||| |||||  |||||| |||||||||| |||  || |||  | ||||||||||| || | || |     
T  28313343 gataacctcaaacttgttggaagacatgcaccactttcatgagcgtgctcacaaaagtcatagcttacactattgatagacaactttgctacttcttgca 28313244  T
Q  157 cttccaacttcttggttagtgcttcgattttgttgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttctt 256  Q
    |||||| | |||| | |||   || ||| ||||   | || |||||||| ||| ||| |||||||||||  ||||||||| || ||||||| ||||||||    
T  28313243 cttccatc-tcttagctag---tttgatcttgtaattgaggagtttgttgctttctagtaatgcatcat--gtttccaagcttagaactccctgcttctt 28313150  T
Q  257 aacaacacccctatactcgctttgagggaaatactcgttcaaggacatgttatcaatgagctcttggatttctgttgcaattttgttcttcatggtacct 356  Q
     || ||| |||||| ||||||||||||   ||| ||||||||||||||||| || ||||||||| ||||||  | ||||| |||||||||||||||||||    
T  28313149 taccacatccctattctcgctttgaggacgatattcgttcaaggacatgttgtcgatgagctctcggattttagctgcaaatttgttcttcatggtacct 28313050  T
Q  357 tcagttgatgcgtctaagagcatgcaggttgttggcttaagaccatatgtgtaagtcaatgcaatctccatttttgaaaacgtaagcctgagacaacgct 456  Q
     |||||||||||||||| |||||||||||||||||||| || |||| |||| |||| || | ||| ||||| ||||||||  |   |||  |||||| ||    
T  28313049 ccagttgatgcgtctaaaagcatgcaggttgttggcttcagtccatctgtgaaagttaaggtaatttccatctttgaaaatttgttcctcggacaacact 28312950  T
Q  457 tgagtagtaacttgtatttcttctatgcatcatagagattctctccatcttcttgttgaaaacc 520  Q
    |||||||||| |||||  ||| | ||||||| ||||||||   |||| |||||||||| |||||    
T  28312949 tgagtagtaatttgtacctctcccatgcatcgtagagatttattccaccttcttgttggaaacc 28312886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 59 - 327
Target Start/End: Complemental strand, 19292525 - 19292255
Alignment:
Q  59 gataaccccaaacttgctggaagacatgcactacttttatgagattgctcaaaaaagtcataacttac--cattttttgacaactttgccacgttttacg 156  Q
    |||||||| |||||||||||||| ||||||| ||||| | ||| ||||||| |||||||  | |||||  ||||  ||||||||||| | || | ||  |    
T  19292525 gataaccctaaacttgctggaagtcatgcaccactttcacgagcttgctcataaaagtcccatcttacaccattgattgacaacttttctacttcttctg 19292426  T
Q  157 cttccaacttcttggttagtgcttcgattttgttgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttctt 256  Q
    |||||||| |||| | || ||||| ||| ||||  |||||||||||||| |||  || ||| |||||||| |||| |||   | ||||||| ||||| ||    
T  19292425 cttccaacctcttagctaatgctttgatcttgtcactaagaagtttgttgctttttagtaaggcatcatgtgtttgcaaacatagaactccttgcttttt 19292326  T
Q  257 aacaacacccctatactcgctttgagggaaatactcgttcaaggacatgttatcaatgagctcttggattt 327  Q
    ||| |||||| ||| |||||||||||||  ||||||||||||||||||| | | ||||| |||| ||||||    
T  19292325 aaccacacccatattctcgctttgagggcgatactcgttcaaggacatgatgtaaatgaactctcggattt 19292255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 241 - 429
Target Start/End: Complemental strand, 13394934 - 13394746
Alignment:
Q  241 gaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcgttcaaggacatgttatcaatgagctcttggatttctgttgcaatttt 340  Q
    |||||||||| ||||| || |||||||||  |||||||||||||  | |||||||||||||||| || | ||| | |||| || |||||  |||| ||||    
T  13394934 gaactccatgattcttcaccacacccctagtctcgctttgagggtgacactcgttcaaggacatcttgttaattaactctcggttttctagtgcagtttt 13394835  T
Q  341 gttcttcatggtaccttcagttgatgcgtctaagagcatgcaggttgttggcttaagaccatatgtgtaagtcaatgcaatctccattt 429  Q
     ||| |||| ||||||   | |||||| ||||| |||||   ||||||||| |||||||||| |||| ||| |||||||||||||||||    
T  13394834 tttcatcatcgtacctcatgatgatgcatctaaaagcatatgggttgttgggttaagaccatctgtgaaaggcaatgcaatctccattt 13394746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 583 - 798
Target Start/End: Original strand, 21828066 - 21828282
Alignment:
Q  583 tacgcaagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaa-aagaga 681  Q
    ||||||||||||||| ||||||| ||| ||| ||||   |||||||||| ||    |||||||| |||||||||||||| |||   ||||||| ||||||    
T  21828066 tacgcaagtaataaagtagtaagttat-gtctccactgagattgtcgttaaaatcagtaattagtggaatttattagaaataaaataatttaataagaga 21828164  T
Q  682 tgaagtt-gtttgcagggatttaattgttttgcccaatgcgagattaaattttgtgattcagaaatataacgtcgattagaaaatccttgaattcaccct 780  Q
    ||||||| |||||||||| ||||  |||  | | |||||||||||||  |||||||||||| || ||||| | |||||||  ||||||||||| | ||||    
T  21828165 tgaagttcgtttgcagggttttacatgtccttctcaatgcgagattaggttttgtgattcataattataatgacgattagggaatccttgaatcccccct 21828264  T
Q  781 tctgtctttgttggaatt 798  Q
    ||  ||||| ||||||||    
T  21828265 tccatctttcttggaatt 21828282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 469
Target Start/End: Complemental strand, 19292252 - 19292128
Alignment:
Q  345 ttcatggtaccttcagttgatgcgtctaagagcatgcaggttgttggcttaagaccatatgtgtaagtcaatgcaatctccatttttgaaaacgtaagcc 444  Q
    |||||||||||| |   |||||| ||||| | |||||| ||||||||||||||||||| |||  |||| |||||||| ||||||| ||||||  |  |||    
T  19292252 ttcatggtacctcctcctgatgcatctaaaaacatgcatgttgttggcttaagaccatttgtaaaagttaatgcaatttccatttctgaaaatttgtgcc 19292153  T
Q  445 tgagacaacgcttgagtagtaactt 469  Q
       |||||||||| |||||||||||    
T  19292152 ccggacaacgctttagtagtaactt 19292128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 13395115 - 13395083
Alignment:
Q  58 ggataaccccaaacttgctggaagacatgcact 90  Q
    |||||||||||||||||||||||||||||||||    
T  13395115 ggataaccccaaacttgctggaagacatgcact 13395083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 615 - 795
Target Start/End: Original strand, 7741229 - 7741410
Alignment:
Q  615 ccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatt-taaaagagatgaagttgtttgcagggatttaattgttttgc 713  Q
    ||||||||||| ||||||||  |||||||| |||||||||||||||| |||| |||||  |||| ||||||||| |||| || |  ||||||||| ||||    
T  7741229 ccacatggattatcgtttaatttggtaattggcggaatttattagaaataacaaaattaaaaaacagatgaagtggtttacaagattttaattgtcttgc 7741328  T
Q  714 ccaatgcgagatta-aattttgtgattcagaaatataacgtcgattagaaaatccttgaattcacccttctgtctttgttgga 795  Q
    ||||||||| ||||  || ||||||||||||| | |||||||||||| |||||||||||| || |||||||||||||||||||    
T  7741329 ccaatgcgaaattagtatgttgtgattcagaagtttaacgtcgattacaaaatccttgaa-tcccccttctgtctttgttgga 7741410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 587 - 773
Target Start/End: Complemental strand, 18179399 - 18179214
Alignment:
Q  587 caagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaaaagagatgaag 686  Q
    ||||||||||| ||||||| ||| ||  ||| ||| ||| || || ||| |||||| |||| ||||||||||||| |||   |||| |||||||||||||    
T  18179399 caagtaataaagtagtaagttattgtatccatatgcattatctttcaacttggtaaatagcagaatttattagaaataaaagaatt-aaaagagatgaag 18179301  T
Q  687 ttgtttgcagggatttaattgttttgcccaatgcgagattaaatt-ttgtgattcagaaatataacgtcgattagaaaatccttgaat 773  Q
    | |||||||||  |||||||||||| |||||||||||||||| || ||||||||||||| ||||||   ||||| | |||||||||||    
T  18179300 tggtttgcaggattttaattgtttt-cccaatgcgagattaagttgttgtgattcagaagtataaccgtgattacagaatccttgaat 18179214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 589 - 657
Target Start/End: Complemental strand, 20695991 - 20695923
Alignment:
Q  589 agtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttatt 657  Q
    ||||||||| ||||||| ||||||| ||||| ||||||||||| |||  ||||||||  ||||||||||    
T  20695991 agtaataaagtagtaagttatcgtctccacagggattgtcgttcaactcggtaattataggaatttatt 20695923  T

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Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 264 - 470
Target Start/End: Complemental strand, 18779688 - 18779483
Alignment:
Q  264 cccctatactcgctttgagggaaatactcgttcaaggacatgttatcaatgagctcttggatttctgttgcaattttgttcttcatggtaccttcagttg 363  Q
    ||||||| |||||||||||||  ||||||||||||| |||| |||| |||||| |||   ||||||  |  | |||||||||| ||||||||| |   ||    
T  18779688 cccctattctcgctttgagggtgatactcgttcaagaacat-ttataaatgagatctcaaatttctactttagttttgttctttatggtacctccgactg 18779590  T
Q  364 atgcgtctaagagcatgcaggttgttggcttaagaccatatgtgtaagtcaatgcaatctccatttttgaaaacgtaagcctgagacaacgcttgagtag 463  Q
    ||| ||||||||||||||||| ||||||||||| ||||| |||| || ||||||||||  |||||| |||||   |  |||  |||||||||||||||||    
T  18779589 atgtgtctaagagcatgcaggctgttggcttaaaaccatttgtgaaattcaatgcaattcccatttctgaaattttttgcccaagacaacgcttgagtag 18779490  T
Q  464 taacttg 470  Q
    |||||||    
T  18779489 taacttg 18779483  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 579 - 775
Target Start/End: Complemental strand, 21048436 - 21048242
Alignment:
Q  579 atcgtacgcaagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaaaag 678  Q
    ||||||||||| |||||||   ||||| |||||||  |||| ||||||| ||| ||| ||||||||||||||||||||||||| |||   ||||| ||||    
T  21048436 atcgtacgcaaataataaaaaggtaagttatcgtcttcacaaggattgttgttcaacttggtaattagcggaatttattagaaataaaagaattt-aaag 21048338  T
Q  679 agatgaagttgtttgcagggatttaattgttttgcccaatgcgagattaaattttgtgattcagaaatataacgtcgattagaaaatccttgaattc 775  Q
    ||||||||| ||| ||| || |||||| ||  |||  ||||||||||||  ||||||||||||||| | ||||  |||||| | |||||||||||||    
T  21048337 agatgaagtggttggcatggttttaatcgtcatgcataatgcgagattaggttttgtgattcagaagtttaacagcgatta-agaatccttgaattc 21048242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 382
Target Start/End: Complemental strand, 1003575 - 1003490
Alignment:
Q  297 aaggacatgttatcaatgagctcttggatttctgttgcaattttgttcttcatggtaccttcagttgatgcgtctaagagcatgca 382  Q
    |||||||||||||| ||||||||| | ||||| | | || |||||||||||||||||||| |   |||||| ||||| ||||||||    
T  1003575 aaggacatgttatcgatgagctctcgaatttcagctacagttttgttcttcatggtacctcctactgatgcatctaaaagcatgca 1003490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 726
Target Start/End: Complemental strand, 33520209 - 33520106
Alignment:
Q  623 attgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaaaagagatgaagttgtttgcagggatttaattgttttgcccaatgcga 722  Q
    ||||||||| |||  | ||| ||| ||||||||||| || ||| | ||||||||||||||||| | |||| ||||| |||||||| | ||||| |||| |    
T  33520209 attgtcgttcaactcgataaatagtggaatttattataaataaatgaatttaaaagagatgaaatggtttacagggttttaattgctctgccctatgcaa 33520110  T
Q  723 gatt 726  Q
    ||||    
T  33520109 gatt 33520106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 522
Target Start/End: Complemental strand, 1003392 - 1003319
Alignment:
Q  449 acaacgcttgagtagtaacttgtatttcttctatgcatcatagagattctctccatcttcttgttgaaaaccgg 522  Q
    |||||||||||||||||| |||||  ||| | ||||||| ||||||||||||   | ||||||||| |||||||    
T  1003392 acaacgcttgagtagtaaattgtacctctcccatgcatcgtagagattctctatgttttcttgttggaaaccgg 1003319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 587 - 661
Target Start/End: Original strand, 6887085 - 6887159
Alignment:
Q  587 caagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaa 661  Q
    |||||| |||||||||||| ||||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||    
T  6887085 caagtattaaattagtaagttatcgtctccacaaggattgtcgttcaacttggtaattagcggaatttattagaa 6887159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 672 - 798
Target Start/End: Complemental strand, 8541827 - 8541700
Alignment:
Q  672 ttaaaagagatgaagttgtttgcagggatttaattgttttgcccaatgcgagattaaatt-ttgtgattcagaaatataacgtcgattagaaaatccttg 770  Q
    |||||||||||||||| |||||||||  ||||||| || |||||||||||||||||  || |||||||| | || |||||||  ||||||  ||||| ||    
T  8541827 ttaaaagagatgaagtggtttgcaggattttaattattctgcccaatgcgagattaggttgttgtgattgaaaagtataacgaagattagggaatccatg 8541728  T
Q  771 aattcacccttctgtctttgttggaatt 798  Q
    ||| | | || || ||||||||||||||    
T  8541727 aatcccctctcctttctttgttggaatt 8541700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 669 - 760
Target Start/End: Original strand, 28290312 - 28290404
Alignment:
Q  669 aatttaaaagagatgaagttgttt-gcagggatttaattgttttgcccaatgcgagattaaattttgtgattcagaaatataacgtcgattag 760  Q
    |||||| || |||||||||||||| | |||| |||||||||  ||||||||| |||||||  ||||||||||||||| | ||||| |||||||    
T  28290312 aatttagaaaagatgaagttgttttgtagggttttaattgtcctgcccaatgtgagattagtttttgtgattcagaagtttaacggcgattag 28290404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 661
Target Start/End: Complemental strand, 14140276 - 14140203
Alignment:
Q  588 aagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaa 661  Q
    |||||||| | ||||||| |||| || ||||||||||||||||| ||| | | ||||||| |||||||||||||    
T  14140276 aagtaatacaatagtaagttatcatctccacatggattgtcgttgaacttagaaattagcagaatttattagaa 14140203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 700 - 796
Target Start/End: Original strand, 27084551 - 27084647
Alignment:
Q  700 tttaattgttttgcccaatgcgagattaaattttgtgattcagaaatataacgtcgattagaaaatccttgaattcacccttctgtctttgttggaa 796  Q
    |||||||||  |||| ||||| ||||||  |||||||||||| |  ||||||| ||||||   ||||||||||| | |||||||||||||| |||||    
T  27084551 tttaattgtcctgcctaatgcaagattatgttttgtgattcataggtataacgacgattaaggaatccttgaatccccccttctgtctttgatggaa 27084647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 670
Target Start/End: Original strand, 35134470 - 35134553
Alignment:
Q  587 caagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaa 670  Q
    ||||||||||| |||| || ||  ||| ||| | ||||||||||||||| |||||||||||  |||||||||||| ||| ||||    
T  35134470 caagtaataaaatagtgagttactgtctccataaggattgtcgtttaacttggtaattagcaaaatttattagaagtaaataaa 35134553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 800
Target Start/End: Original strand, 28259523 - 28259624
Alignment:
Q  700 tttaattgttttgcccaatgcgagattaaatt-ttgtgattcagaaatataacgtcgattagaaaatccttgaattcacccttctgtctttgttggaatt 798  Q
    |||||||||| || | ||||||||||||  || || |||||||||| |||||||  ||||||| ||||||||||| | | ||  | ||||||||||||||    
T  28259523 tttaattgttatgtctaatgcgagattatgttgttatgattcagaattataacggtgattagagaatccttgaatcccctctcttttctttgttggaatt 28259622  T
Q  799 ca 800  Q
    ||    
T  28259623 ca 28259624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 583 - 731
Target Start/End: Original strand, 21604669 - 21604816
Alignment:
Q  583 tacgcaagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaaaagagat 682  Q
    ||||||| ||||||| ||||||| |||| ||  ||||  |||||||| | |||  | |||||||||||||||| || || ||| || | |||||||||||    
T  21604669 tacgcaaataataaagtagtaagctatcatctacacaaagattgtcgctcaactagataattagcggaatttactataaataa-tagaattaaaagagat 21604767  T
Q  683 gaagttgtttgcagggatttaattgttttgcccaatgcgagattaaatt 731  Q
    |||||  |||||||| ||||||||||  ||||||||| |||||||||||    
T  21604768 gaagtgatttgcaggaatttaattgtcatgcccaatgtgagattaaatt 21604816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 717
Target Start/End: Original strand, 26498761 - 26498860
Alignment:
Q  617 acatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaaaagagatgaagttgtttgcagggatttaattgttttgccca 716  Q
    ||||||||||||||| ||| |||||||||| |||||||||||||| |||   |||||| || ||| |||||||||||  ||| ||||||||| || ||||    
T  26498761 acatggattgtcgttcaacttggtaattagaggaatttattagaagtaa-agaatttataaaagacgaagttgtttgttgggttttaattgtctttccca 26498859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 198 - 407
Target Start/End: Original strand, 17554844 - 17555053
Alignment:
Q  198 agtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaa-atactcgttc 296  Q
    |||||||| ||||||| ||| |||||||| | ||||||| || ||||| | |||||||| || |||||| ||| || ||||| |||||  ||| ||| ||    
T  17554844 agtttgttgcttgctagtaacgcatcatgtgcttccaagcttagaacttcttgcttcttcaccacacccttattcttgcttt-agggacgatattcgctc 17554942  T
Q  297 aaggacatgttatcaatgagctcttggatttctgttgcaattttgttcttcatggtaccttcagttgatgcgtctaagagcatgcaggttgttggcttaa 396  Q
    ||  ||||||| |  |||||||||  |||||| | |||| |||| |||||||||||||||   |||||||| ||||| |||||||  ||||||||||| |    
T  17554943 aaaaacatgttgtttatgagctctcagatttcagctgcagtttttttcttcatggtacctcatgttgatgcatctaaaagcatgcgtgttgttggcttca 17555042  T
Q  397 gaccatatgtg 407  Q
     ||||| ||||    
T  17555043 aaccatttgtg 17555053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 349
Target Start/End: Original strand, 13040596 - 13040738
Alignment:
Q  207 cttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaaatactcgttcaaggacatgt 306  Q
    ||||||||||| ||||||||  |||||||| || ||||||| |||||||| || ||  |||||| |||| |||||||   ||| | ||| |||| |||||    
T  13040596 cttgctattaaggcatcatgaatttccaagcttagaactccttgcttcttcaccacgtccctatcctcgttttgaggacgatatttgttaaaggccatgt 13040695  T
Q  307 tatcaatgagctcttggatttctgttgcaattttgttcttcat 349  Q
    | |||||||||| |  |||||  | | ||||||||||||||||    
T  13040696 tgtcaatgagctttcagatttgagctacaattttgttcttcat 13040738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 579 - 659
Target Start/End: Complemental strand, 24438641 - 24438561
Alignment:
Q  579 atcgtacgcaagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattag 659  Q
    ||||||||||||||||||| ||||||| ||||||    |||| ||||| |||| ||| |||| ||||| ||||||||||||    
T  24438641 atcgtacgcaagtaataaaatagtaagttatcgttttaacatagattgccgttcaacttggtgattagtggaatttattag 24438561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 30348269 - 30348388
Alignment:
Q  7 aggatttctttgttgcctcgtgtacacacccatgtattttacttgcttcttggataaccccaaacttgctggaagacatgcactacttttatgagattgc 106  Q
    ||||||||||||||| || || ||  ||||||||||||| ||||||| || | |||||||||| |||  | |||| ||||||| ||||| ||||| | ||    
T  30348269 aggatttctttgttgtctggtataagcacccatgtatttcacttgctcctcgaataaccccaatctttttagaaggcatgcaccactttcatgagctagc 30348368  T
Q  107 tcaaaaaagtcataacttac 126  Q
    | | ||||||| || |||||    
T  30348369 ttacaaaagtcgtagcttac 30348388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 582 - 640
Target Start/End: Complemental strand, 25461283 - 25461225
Alignment:
Q  582 gtacgcaagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggt 640  Q
    |||| ||||||||||| ||||||| ||||||| ||| ||||||||||||| ||| ||||    
T  25461283 gtacacaagtaataaagtagtaagttatcgtctccaaatggattgtcgttcaacttggt 25461225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 30348577 - 30348638
Alignment:
Q  346 tcatggtaccttcagttgatgcgtctaagagcatgcaggttgttggcttaagaccatatgtg 407  Q
    ||||| ||||| ||| ||||||||||||||||||  || ||||||| |||||||||| ||||    
T  30348577 tcatgatacctccagctgatgcgtctaagagcatatagattgttggattaagaccatctgtg 30348638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 388
Target Start/End: Original strand, 20209 - 20507
Alignment:
Q  92 cttttatgagattgctcaaaaaagtcataactt--accattttttgacaactttgccacgttttacgcttccaacttcttggttagtgcttcgattttgt 189  Q
    |||| ||||| ||||||| |||||| | |||||  ||||||  |||| |||||| | || | || ||||||||| || || | |||||||||||| || |    
T  20209 ctttcatgagcttgctcacaaaagttacaacttccaccattgattgaaaactttactacttcttgcgcttccaaattattagctagtgcttcgatcttat 20308  T
Q  190 tgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgagggaaata 289  Q
     |||||||| || ||| |||||||  || || || || ||||||||  || ||||| | |   |||||| | || || ||| |||||||||  ||  |||    
T  20309 cgctaagaatttagttgcttgctagcaaggcgtcgtgtgtttccaaacttagaacttcctaagtcttaataccaaccatattctcgctttggaggtgata 20408  T
Q  290 ctcgttcaaggacatgttatcaatgagctcttggatttctgttgcaattttgttcttcatggtaccttcagttgatgcgtctaagagcatgcaggttgt 388  Q
    |||||||||||| ||| ||||| ||||||||  | ||||||| ||  || ||||||||||||||||| |   | |||| ||||||||||||||||||||    
T  20409 ctcgttcaaggatatgatatcagtgagctctctggtttctgtagctgttatgttcttcatggtacctccgactaatgcatctaagagcatgcaggttgt 20507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 7405330 - 7405203
Alignment:
Q  186 ttgttgctaagaagtttgtttcttgctattaatgcatcatgcgtttccaagtttggaactccatgcttcttaacaacacccctatactcgctttgaggga 285  Q
    |||||||||||||| ||||| ||||||| ||| ||||||||||||||   | || ||||||| ||||| |||| |||| ||||||  || | ||| | |     
T  7405330 ttgttgctaagaagcttgttgcttgctaataaggcatcatgcgtttctgggcttagaactccttgcttattaataacatccctattatcaccttgggagc 7405231  T
Q  286 aatactcgttcaaggacatgttatcaat 313  Q
     |||||| ||||||||||||||||||||    
T  7405230 gatactcattcaaggacatgttatcaat 7405203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 587 - 727
Target Start/End: Original strand, 22334185 - 22334324
Alignment:
Q  587 caagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaaaagagatga-a 685  Q
    ||||||||||| ||||||| |||| ||  |||||  |||||| || ||| ||||||||||| |||||||||||||  ||  ||||  || |||  ||| |    
T  22334185 caagtaataaagtagtaagttatcatcttcacataaattgtcattcaacttggtaattagctgaatttattagaa--aagcaaataaaagagaactgaga 22334282  T
Q  686 gttgtttgcagggatttaattgttttgcccaatgcgagatta 727  Q
    |||| |||||||| |||||||||| |||||||||||||||||    
T  22334283 gttggttgcagggttttaattgttctgcccaatgcgagatta 22334324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 587 - 727
Target Start/End: Original strand, 6724122 - 6724262
Alignment:
Q  587 caagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaattaactaaatttaaaagagatgaag 686  Q
    ||||||||||  ||||||| ||||||| | |   |||||||| || ||| ||||||||||| ||| || |||||| |||   |||| |||||||||||||    
T  6724122 caagtaataaggtagtaagttatcgtctctatcaggattgtcattcaacttggtaattagcagaaattgttagaaataatagaattaaaaagagatgaag 6724221  T
Q  687 ttgtttgcagggatttaattgttttgcccaatgcgagatta 727  Q
    | ||||| |||  |||||||||  |  ||||||||||||||    
T  6724222 tggtttgtaggattttaattgtactttccaatgcgagatta 6724262  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 661
Target Start/End: Original strand, 11466937 - 11467010
Alignment:
Q  588 aagtaataaattagtaaggtatcgtcaccacatggattgtcgtttaacgtggtaattagcggaatttattagaa 661  Q
    |||||||||| ||||| | ||| ||| |||||||||||||| || ||| | | ||||||| |||||||||||||    
T  11466937 aagtaataaagtagtaggttattgtctccacatggattgtcattcaacttagcaattagcagaatttattagaa 11467010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1587 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1587
Description:

Target: scaffold1587; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 633
Target Start/End: Original strand, 805 - 850
Alignment:
Q  588 aagtaataaattagtaaggtatcgtcaccacatggattgtcgttta 633  Q
    |||||||||| ||||||| ||||||| |||||| ||||||||||||    
T  805 aagtaataaactagtaagctatcgtctccacatagattgtcgttta 850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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