View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-11 (Length: 726)
Name: NF3282-Insertion-11
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 41084467 - 41084774
Alignment:
| Q |
8 |
gatgtaagcatcatataaatgagaaaactcgtatataatgccttaaagtttttatgtgaagatgtaaatatgaatcaagcttagttgaattttatttaat |
107 |
Q |
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| T |
41084467 |
gatgtaagcatcgtataaatgagaaaactcgtatataatgccttaaagtttttatgtgaagatgtaaatatgaatcaagcttagttgaattttatttaat |
41084566 |
T |
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| Q |
108 |
ttgacttagctcgatatgtattgaatcaacctgaattttacctcgtctgcaacacaacctccactctcacgccgacaaactcatttgtcacgccgacgac |
207 |
Q |
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| T |
41084567 |
ttgacttagctcgatatgtattggatcaacctgaattttacctcatctgcaacacaacctccactctcaagccgacaaactcatttgtcacgccgacgac |
41084666 |
T |
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| Q |
208 |
atcatgtcgtcatcgtctatagagatgtgacgccgacctcttcttctccctcacaacatcagagatccgctcatgcctatcaaatcctctatatcgcgac |
307 |
Q |
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| T |
41084667 |
atcatgtcgtcatcgtctatagagatgtgacgccgacctcttcttctccctcacaacatcagatatccgctcatgcctatcaaatcctctatatcgcgac |
41084766 |
T |
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| Q |
308 |
caactttg |
315 |
Q |
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| T |
41084767 |
caactttg |
41084774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 481 - 726
Target Start/End: Original strand, 41084933 - 41085185
Alignment:
| Q |
481 |
taaggtgaaatcaccaaaatagccataatgacacgtggggtgtatattgggtgtttgaaaaaaggatgtctatgaattcataatgctcaagattgctttt |
580 |
Q |
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| T |
41084933 |
taaggtgaaatcaccaaaatagccctaatgacacgtggggtgtatattgggggtttgaaaaaaggatgtctatgaattcataatggccacgattgctttt |
41085032 |
T |
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| Q |
581 |
gatacgaagtgaaaatatgaca------ggcggaacgtacttaacaccaattttgtgagaagcttgaggttgtcgctatgtacgtcccaaccattttcac |
674 |
Q |
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| T |
41085033 |
gatacgaagtgtaaatatgacaaattttgggggaacgtacttaacaccaattttgtgagaagcttgaggttgtcgctatgtacgtcccaaccattttcac |
41085132 |
T |
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| Q |
675 |
cgtgtaaataaactagtactactaagaataatttgttt-aattgtacaactag |
726 |
Q |
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| T |
41085133 |
cgtggaaataaacttgtactactaataataatttgtttaaattgtacaactag |
41085185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 41084835 - 41084889
Alignment:
| Q |
383 |
cgcaaatctgcaacaaggaaataagaaaacctaaacacacggtggtggtggtgtt |
437 |
Q |
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| T |
41084835 |
cgcaaatctgcaacaacgaaataagaaaacctaaacacacggtggtggtggtgtt |
41084889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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