View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282-Insertion-12 (Length: 725)

Name: NF3282-Insertion-12
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282-Insertion-12
NF3282-Insertion-12
[»] chr4 (3 HSPs)
chr4 (10-725)||(21288034-21288754)
chr4 (403-487)||(21284586-21284670)
chr4 (268-301)||(21284461-21284494)


Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 10 - 725
Target Start/End: Original strand, 21288034 - 21288754
Alignment:
Q  10 aattaatccaaaaatcatttatcatatgactcgagtaagttgtattcatttaaccatgttaaagtgtcatgttcatatagatataccattcattcaaaat 109  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  21288034 aattaatccaaaaatcatttatcatatgactcgggtaagttgcattcatttaaccatgttaaagtatcatgttcatatagatatatcattcattcaaaat 21288133  T
Q  110 atagttatacc----------attatataagtaggtcttttatattattgtgacttccatgtgcagaaaaaatgttgacaatggcatattaaatttgtaa 199  Q
    |||||||||||          ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21288134 atagttataccattatgtaccattatataactaggtcttttatattattgtgactttcatgtgcagaaaaaatgttgacaatggcatattaaatttgtaa 21288233  T
Q  200 ttgttgcaagcaccaacaaattttcttagaaatgaaaatatgtctaatgaagatagagtggtcatatgcaagactctatttgaaaaacatgttggagtca 299  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  21288234 ttgttggaagcaccaacaaattttcttagaaatgaaaatatgtctaatgaagatagagtggtcatatgcaagactttatttggaaaacatgttggagtca 21288333  T
Q  300 aattgaaaaaggggatgattaaataattggagtaacaattattatcaacaaatattgttcaatacttcaacacatatgaaaactaagtggaaatgattgt 399  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21288334 aattgaaaaaggggatgattaaataattggggtaacaattattatccacatatattgttcaacacttcaacacatatgaaaactaagtggaaatgattgt 21288433  T
Q  400 ttatatatgcta--atatatctcataaaatgacaaaaatgtatgatcacaaaagaattgaacttgattttgataaaaatcatgagatttctatctcaaaa 497  Q
    ||||||||||||  |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21288434 ttatatatgctaatatatatatcataaaatgacaaaaatgtatggtcacaaaagaattgaacttgattttgataaaaatcatgagatttctatctcaaaa 21288533  T
Q  498 gacaactatttgatatatcttttgtgc-------atgagtacaacaatataacatgtgtcttatacaactgacaggcattcgaaggccttcgaatacgat 590  Q
    |||||||||| ||||| ||||||||||       |||||||||||||||||||| |||||||||||||||||| | ||          ||||||||||||    
T  21288534 gacaactattcgatatctcttttgtgcattgaagatgagtacaacaatataacacgtgtcttatacaactgacggaca----------ttcgaatacgat 21288623  T
Q  591 caaatattctttaaagaaagatatcaaagagccaaattgcaattttgtacgttagtgcgtgatacgaccagaccaacttggtgcatgattcannnnnnnn 690  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||            
T  21288624 caaatattctttaaagaaagatatcaaagagtcaaattgcaattttgtacgttagtgcgtgatac-----gaccaacttggtgcatgattcatttttttt 21288718  T
Q  691 ctt-catggatgtacaacattattcatatcgatttg 725  Q
     || ||||||||||||||||||||||||||||||||    
T  21288719 tttccatggatgtacaacattattcatatcgatttg 21288754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 403 - 487
Target Start/End: Original strand, 21284586 - 21284670
Alignment:
Q  403 tatatgctaatatatctcataaaatgacaaaaatgtatgatcacaaaagaattgaacttgattttgataaaaatcatgagatttc 487  Q
    |||||| |||||| |||||||||||| ||||||| |||| |||||||||||||||||||| ||| ||| |||||| ||| |||||    
T  21284586 tatatgttaatatgtctcataaaatgtcaaaaatttatgttcacaaaagaattgaacttggtttagatcaaaatcgtgaaatttc 21284670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 21284461 - 21284494
Alignment:
Q  268 caagactctatttgaaaaacatgttggagtcaaa 301  Q
    |||||||||||| |||||||||||||||||||||    
T  21284461 caagactctattggaaaaacatgttggagtcaaa 21284494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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