View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-13 (Length: 668)
Name: NF3282-Insertion-13
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 8 - 668
Target Start/End: Original strand, 8459889 - 8460567
Alignment:
| Q |
8 |
gataatgcttgtgaagagtttgctagcaagcttttctagtattattacatgtgatgtgttgtagtataaatgttaattataattaagcttaaatcttgaa |
107 |
Q |
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| T |
8459889 |
gataatgcttgtgaagagtttgctagcaagcttttctagtattattacatgtgatgtgttgtagtataaatgttaattataattaagcttaaatcttgaa |
8459988 |
T |
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| Q |
108 |
tgtagaattgttatttgtcaatatacatgagtttgaaggttgaatgtagaattgttgtgtcattacatgagtttttacatttgagttttttaaagtaaga |
207 |
Q |
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| T |
8459989 |
tgtagaattgttatgtgtcaatatacatgagtttgaaggttgaatgtagaattgttgtgtcattgcatgagtttttacatttgagttttttaaagcaaga |
8460088 |
T |
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| Q |
208 |
agcattagagaggatcaatcatcctagattgacactatcgaacgaaaaagaaaaacaaatattttggagagacataaacctagcctagaaaagtaaaaac |
307 |
Q |
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| T |
8460089 |
agcattagagaggatcaatcatcctagattgacaccattgaacgaaaaagaaaaacaaatattttggagagacataaacctagcctagaaaagtaaaaac |
8460188 |
T |
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| Q |
308 |
aacattggcggaaaaagtccgagctaataaaagcaggaattgaattctaccatgtgaaggtttgagaaaaaacctcaaaagaatccaa------------ |
395 |
Q |
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| T |
8460189 |
aacattggcggaaaaagtccgagctaataaaagcaggaattgaatcctaccatgtgaaggtttgagaaaaaacctcaaaagaatccaatatgtcaacaca |
8460288 |
T |
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| Q |
396 |
---------ttatcgataaattgagagagaccttaaattgcatttgatgaaagtaaaagtaaacaaatatgtcattgattatcgatatctttccttttct |
486 |
Q |
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|| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8460289 |
agagtttccttctcgataaatt--gagagaccttaaatttcatttgatgaaagtaaaagtaaacaaatatgtcatcgattatcgatatctttccttttct |
8460386 |
T |
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| Q |
487 |
atttttattaatgacaaagagctctttatatcagctatttatgattcaactggttacttgaagagaaagaatctccggtaggctttaagtaatgtgcagt |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
8460387 |
atttttattaatgacaaagagctctttatatcagctatttatgattcaactggttacttgaagagaaagaatct-ctgtaggctttaagtaatgtgcagt |
8460485 |
T |
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| Q |
587 |
ctcaaaatgatgcaccttggtgttctcatactccagctagacctactatggtggactttcaatcttggacagaaaatgatga |
668 |
Q |
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| T |
8460486 |
ctcaaaatgatgcaccttggtgttctcatactccagctagacctactatggtggactttcaatcttggacagaaaatgatga |
8460567 |
T |
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