View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-14 (Length: 537)
Name: NF3282-Insertion-14
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 126 - 537
Target Start/End: Original strand, 41671837 - 41672248
Alignment:
| Q |
126 |
agagttgtgagattggcaggtcatggacgtaactctaaggtcgaaaaagcagcaatactaattcaatcctactatagaggatacctagtaagtcttcttt |
225 |
Q |
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| T |
41671837 |
agagttgtgagattggcaggtcatggacgtaactctaaggtcgaaaaagcagcaatactaattcaatcctactatagaggatacctagtaagtcttcttt |
41671936 |
T |
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| Q |
226 |
ttatctgttttggtaaagttgttgatcattatttaatactactcacagtgtagcatcatattaattctgtggttcagtatggtccataaatatgtcatac |
325 |
Q |
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| T |
41671937 |
ttatctgttttggtaaagttgttgatcattatttaatactactcacagtgtagcatcatattaattctgtggttcagtatggtccataaatatgtcatac |
41672036 |
T |
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| Q |
326 |
acccatacctactttcaaactttcagttacatgtattaatagcatatgaatgacacttgcaatatatgatcggttttacctgcttccaacattaaagtca |
425 |
Q |
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| T |
41672037 |
acccatacctactttcaaactttcagttacatgtattaatagcatatgaatgacacttgcaatatatgatcggttttacctgcttcgaacattaaagtca |
41672136 |
T |
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| Q |
426 |
tattgatttttatcatatcattgtagtaaacttgcatggaaagtatttgtattagattgtacggattaactaaaatttaaccctgaacacactcaatcat |
525 |
Q |
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| T |
41672137 |
tattgatttttatcatatcattgtagtaaacttgcatggaaagtatttgtattagattgtacggattaactaaaatttaaccctgaacacactcaatcat |
41672236 |
T |
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| Q |
526 |
ttaaacaactta |
537 |
Q |
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| T |
41672237 |
ttaaacaactta |
41672248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 41671719 - 41671778
Alignment:
| Q |
8 |
caatgaaggaagcaccacatcaacacccttaacagaagagagaaatcatgcaattgccta |
67 |
Q |
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| T |
41671719 |
caatgaaggaagcaccacatcaacacccttaacagaagagagaaatcatgcaattgccta |
41671778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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