View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-17 (Length: 303)
Name: NF3282-Insertion-17
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-17 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0702 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 5478680 - 5478398
Alignment:
| Q |
8 |
acaaaaactaccactactgattcctagagtttactagggtctaccaaatgttaacaacttgaatcttactttcaaaaactacctacatgcataaataaac |
107 |
Q |
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| T |
5478680 |
acaaaaactaccactactgattcctagagtttactagggtctaccaaatgttaacaacttgaatcttactttcaaaaactacctacatgcataaa----c |
5478585 |
T |
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| Q |
108 |
cttccttaaaattcttagtaatgcgggactcagctacaacttcaactgtaaatatttcatgtgaatcaaacttttcaaattgttagcgattgagcctgct |
207 |
Q |
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| T |
5478584 |
cttact-aaaattcttagtaatgcgggactctgctacaacttcaactgtaaatatttcatgtgaatcaaacttttcaaattgttagcgcttgagcctgct |
5478486 |
T |
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| Q |
208 |
tggatcacatctagacaaatagaaatgaggtgacggataatgttacgaaatgttcgtcgaggtggataaatacgtgtacatatttttc |
295 |
Q |
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| T |
5478485 |
tggatcacatctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtggataaatacgtgtacatatttttc |
5478398 |
T |
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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 163892 - 163967
Alignment:
| Q |
197 |
ttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgttacgaaatgttcgtcgaggtgg |
272 |
Q |
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| T |
163892 |
ttgagcccgcttggatcacatctagacaaatagaagtagggcgatgggcaatgtcacgaaatgttcgccgaggtgg |
163967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 18343477 - 18343402
Alignment:
| Q |
197 |
ttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgttacgaaatgttcgtcgaggtgg |
272 |
Q |
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| T |
18343477 |
ttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgg |
18343402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 6989 - 7023
Alignment:
| Q |
197 |
ttgagcctgcttggatcacatctagacaaatagaa |
231 |
Q |
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| T |
6989 |
ttgagcccgcttggatcacatctagacaaatagaa |
7023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 35195074 - 35195108
Alignment:
| Q |
197 |
ttgagcctgcttggatcacatctagacaaatagaa |
231 |
Q |
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| T |
35195074 |
ttgagcccgcttggatcacatctagacaaatagaa |
35195108 |
T |
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