View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-18 (Length: 423)
Name: NF3282-Insertion-18
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 423
Target Start/End: Complemental strand, 54817876 - 54817461
Alignment:
| Q |
8 |
cttctctctaacctcgatagcatcaacaatggcaaacaaagaaatggatattgcgagaggtgtggatttgaagcgttacatgggtcggtggtacgagata |
107 |
Q |
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| T |
54817876 |
cttctttctaacctcgatagcatcaacaatggcaaacaaagaaatggatgttgcgagaggtgtggatttgaagcgttacatgggtcggtggtacgagata |
54817777 |
T |
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| Q |
108 |
gcgtgttttccatcaaggtttcaaccaagtgatggtaagaacacaagagcaacctacactctgagagatgatggaactgtgaatgttctgaatgagactt |
207 |
Q |
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| T |
54817776 |
gcgtgttttccatcaaggtttcaaccaagtgatggtaagaacacaagagcaacctacactctgagagatgatggaactgtgaatgttctgaatgagactt |
54817677 |
T |
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| Q |
208 |
ggagtggtggaaaaagaagttacattgaaggtactgcttataaagctgatcctaatagtgatcaggctaaacttaaggtcaaattctatgttcctccaat |
307 |
Q |
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| T |
54817676 |
ggagtggtggaaaaagaagttacattgaaggtactgcttataaagctgatcctaatagtgatgaggctaaacttaaggtcaaattctatgttcctccaat |
54817577 |
T |
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| Q |
308 |
gcttcctatcattcctgttactggggattattgggttttgcaccttgatcatgattatcattatgctcttattggacaacctagcaggaattatctttgg |
407 |
Q |
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| T |
54817576 |
gcttcctatcattcctgttactggggattattgggttttgcaccttgatcatgattatcattatgctcttattggacaacctagcaggaattatctttgg |
54817477 |
T |
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| Q |
408 |
gtatgtgttttacttt |
423 |
Q |
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| T |
54817476 |
gtatgtgttttacttt |
54817461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 382
Target Start/End: Complemental strand, 54820646 - 54820409
Alignment:
| Q |
145 |
agaacacaagagcaacctacactctgagagatgatggaactgtgaatgttctgaatgagacttggagtggtggaaaaagaagttacattgaaggtactgc |
244 |
Q |
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| T |
54820646 |
agaacacaagagccacatacactctaaacagtgatgggactgttcatgttctcaatgagacttggaataatggtaaaagaacctctatagaaggaagtgc |
54820547 |
T |
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| Q |
245 |
ttataaagctgatcctaatagtgatcaggctaaacttaaggtcaaattctatgttcctccaatgcttcctatcattcctgttactggggattattgggtt |
344 |
Q |
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| T |
54820546 |
ttataaggctgaccccaaaagtgatgaagctaagctcaaggtcaaattctatgttcctccattcttgccaattattcctgctgttggagattactggatt |
54820447 |
T |
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| Q |
345 |
ttgcaccttgatcatgattatcattatgctcttattgg |
382 |
Q |
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| T |
54820446 |
ttgtaccttgatgaagattatcaatatgctctcattgg |
54820409 |
T |
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