View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282-Insertion-2 (Length: 1096)

Name: NF3282-Insertion-2
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282-Insertion-2
NF3282-Insertion-2
[»] chr8 (22 HSPs)
chr8 (411-602)||(4219856-4220048)
chr8 (777-885)||(40566509-40566617)
chr8 (261-372)||(4219622-4219745)
chr8 (795-863)||(4994155-4994223)
chr8 (813-879)||(17893301-17893367)
chr8 (722-764)||(27072935-27072977)
chr8 (795-888)||(1806238-1806331)
chr8 (724-764)||(8402596-8402636)
chr8 (796-866)||(21125022-21125092)
chr8 (789-888)||(8402543-8402640)
chr8 (720-764)||(20271133-20271177)
chr8 (720-764)||(21057761-21057805)
chr8 (720-764)||(36009847-36009891)
chr8 (788-888)||(38357544-38357644)
chr8 (795-879)||(40694684-40694768)
chr8 (385-419)||(4219745-4219779)
chr8 (668-718)||(4220323-4220373)
chr8 (904-937)||(4221354-4221387)
chr8 (838-879)||(4994267-4994308)
chr8 (815-880)||(20271104-20271169)
chr8 (815-880)||(21057732-21057797)
chr8 (723-764)||(23848359-23848400)
[»] scaffold0003 (1 HSPs)
scaffold0003 (797-888)||(136394-136485)
[»] chr4 (18 HSPs)
chr4 (795-876)||(45654082-45654163)
chr4 (795-876)||(2324745-2324826)
chr4 (814-875)||(21433861-21433922)
chr4 (720-764)||(16458039-16458083)
chr4 (720-764)||(29566062-29566106)
chr4 (716-764)||(52374888-52374936)
chr4 (721-764)||(7403203-7403246)
chr4 (788-874)||(17508828-17508914)
chr4 (831-880)||(41840576-41840625)
chr4 (731-764)||(42516565-42516598)
chr4 (720-764)||(15134542-15134586)
chr4 (795-863)||(16457920-16457988)
chr4 (795-879)||(21433944-21434028)
chr4 (720-838)||(993242-993361)
chr4 (733-764)||(2247568-2247599)
chr4 (797-872)||(9023901-9023976)
chr4 (816-879)||(32286323-32286386)
chr4 (795-889)||(52374891-52374985)
[»] chr6 (16 HSPs)
chr6 (813-879)||(4787806-4787872)
chr6 (814-887)||(17600695-17600768)
chr6 (780-879)||(1473599-1473698)
chr6 (831-879)||(5706726-5706774)
chr6 (720-764)||(5706739-5706783)
chr6 (716-764)||(12731525-12731573)
chr6 (831-879)||(19711622-19711670)
chr6 (724-764)||(31946938-31946978)
chr6 (720-763)||(4483487-4483530)
chr6 (720-763)||(17390018-17390061)
chr6 (721-764)||(24691924-24691967)
chr6 (807-876)||(4033075-4033144)
chr6 (814-863)||(9358219-9358268)
chr6 (720-757)||(9644892-9644929)
chr6 (720-757)||(9650909-9650946)
chr6 (827-888)||(12731657-12731718)
[»] chr1 (14 HSPs)
chr1 (795-885)||(38663629-38663719)
chr1 (720-764)||(7444256-7444300)
chr1 (729-764)||(5695662-5695697)
chr1 (789-864)||(49403471-49403546)
chr1 (789-863)||(34437598-34437672)
chr1 (796-845)||(4713268-4713317)
chr1 (803-888)||(49822607-49822692)
chr1 (720-764)||(34437717-34437761)
chr1 (789-853)||(40668939-40669003)
chr1 (724-764)||(49822648-49822688)
chr1 (729-764)||(21281461-21281496)
chr1 (816-879)||(34437689-34437752)
chr1 (511-554)||(5388858-5388903)
chr1 (720-764)||(40669049-40669091)
[»] chr3 (17 HSPs)
chr3 (795-879)||(29955022-29955106)
chr3 (795-879)||(30004176-30004260)
chr3 (795-879)||(36480778-36480862)
chr3 (816-879)||(35357301-35357364)
chr3 (795-878)||(51541316-51541399)
chr3 (795-876)||(31205356-31205437)
chr3 (815-879)||(37189235-37189299)
chr3 (814-889)||(14345125-14345200)
chr3 (796-846)||(1753333-1753383)
chr3 (718-764)||(14345124-14345170)
chr3 (724-762)||(36480829-36480867)
chr3 (796-875)||(32880985-32881064)
chr3 (797-863)||(3901499-3901565)
chr3 (724-762)||(35415091-35415129)
chr3 (797-866)||(3901566-3901635)
chr3 (846-879)||(36046329-36046362)
chr3 (796-853)||(48543454-48543511)
[»] chr2 (12 HSPs)
chr2 (795-888)||(18719708-18719799)
chr2 (795-879)||(42094274-42094357)
chr2 (724-764)||(42094322-42094362)
chr2 (800-879)||(12703456-12703535)
chr2 (720-761)||(16209498-16209539)
chr2 (816-872)||(1469730-1469786)
chr2 (816-888)||(3466479-3466551)
chr2 (720-764)||(25666918-25666962)
chr2 (730-764)||(6979116-6979150)
chr2 (487-560)||(13563720-13563796)
chr2 (834-879)||(30841085-30841130)
chr2 (800-853)||(44487163-44487216)
[»] chr5 (14 HSPs)
chr5 (720-764)||(33029469-33029513)
chr5 (720-764)||(41169510-41169554)
chr5 (794-863)||(4158149-4158218)
chr5 (715-764)||(35244940-35244989)
chr5 (720-764)||(3907631-3907675)
chr5 (720-764)||(4190181-4190225)
chr5 (720-754)||(9999795-9999829)
chr5 (814-879)||(25545204-25545267)
chr5 (720-762)||(26608579-26608621)
chr5 (795-877)||(36059278-36059360)
chr5 (814-880)||(42420107-42420173)
chr5 (723-756)||(18247868-18247901)
chr5 (796-875)||(38029531-38029607)
chr5 (717-762)||(40927728-40927773)
[»] chr7 (12 HSPs)
chr7 (817-879)||(5443622-5443684)
chr7 (817-879)||(5452667-5452729)
chr7 (723-760)||(26327772-26327809)
chr7 (795-888)||(26862984-26863077)
chr7 (795-876)||(47497771-47497852)
chr7 (721-760)||(31042115-31042154)
chr7 (816-879)||(31042395-31042458)
chr7 (718-756)||(3235532-3235570)
chr7 (722-764)||(12275858-12275900)
chr7 (803-876)||(3235546-3235619)
chr7 (715-764)||(40134504-40134553)
chr7 (796-853)||(46074127-46074184)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 4e-78; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 411 - 602
Target Start/End: Original strand, 4219856 - 4220048
Alignment:
Q  411 taataaactttaaactacaatcataaaagaaaacacacgtagtaaatatttgatgctgtattgaattcccacacgttttcaatttt-tgaaaataatttt 509  Q
    |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||  ||||||||||| |||||||||||||    
T  4219856 taatcaaccttaaactacaatcataaaaggaaacacacgtagtaaatatttgatgttgtattgaattccaacatattttcaattttttgaaaataatttt 4219955  T
Q  510 cctcacgcaaaatcaaatttaattcattcacttcatttaaggaaaaaagtaccaatattctcattgatcatatactatatatgacaaaaatca 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  4219956 cctcacgcaaaatcaaatttaattcattcacttcatttaaggaaaatagtactaatattctcattgatcatatactatatatgacaaaaatca 4220048  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 777 - 885
Target Start/End: Original strand, 40566509 - 40566617
Alignment:
Q  777 gttaaaattcgcatggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttg 876  Q
    |||||||||  |||||||||  ||||||||| |||||||||||||| || |||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  40566509 gttaaaatttacatggatcctccatgatttggtgagactcatgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgtgttg 40566608  T
Q  877 ctaagattc 885  Q
    |||| ||||    
T  40566609 ctaacattc 40566617  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 4219622 - 4219745
Alignment:
Q  261 ttggttattctac--tccaatttctgttgcattat---tcatgcgatagttca-------catgactacactactaccttaggaagaaaattataattca 348  Q
    |||||||||||||  ||||||||||||||||||||   |||||||||||||||       |||||||||| |||||  ||||||||||||||||||||||    
T  4219622 ttggttattctacactccaatttctgttgcattataattcatgcgatagttcacacttcacatgactacagtactatattaggaagaaaattataattca 4219721  T
Q  349 accaccacaacaaaccactatgtc 372  Q
    ||||||||||||||||||||||||    
T  4219722 accaccacaacaaaccactatgtc 4219745  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 795 - 863
Target Start/End: Complemental strand, 4994223 - 4994155
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgtt 863  Q
    ||||||||||||| || |||||||  || || |||||||||||||||||||||||||||||||||||||    
T  4994223 cccacatgatttggtgggactcataagaattttaaccaatcaaaaagagtatgttaaaaaatatgtgtt 4994155  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 813 - 879
Target Start/End: Complemental strand, 17893367 - 17893301
Alignment:
Q  813 actcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||||||| |||| ||||||| ||||| ||||||||||| | ||||||||||||||||||||    
T  17893367 actcatgtgagttttaactaatcaaagagagtctgttaaaaaatgtatgttaaaatgtgtgttgcta 17893301  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 722 - 764
Target Start/End: Complemental strand, 27072977 - 27072935
Alignment:
Q  722 gaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  27072977 gaaatactagcaacacatattttaacacacacttttcaacaca 27072935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 795 - 888
Target Start/End: Original strand, 1806238 - 1806331
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    |||||||| |||| || ||| || ||||||| |||| | | ||| | |||||||| |||| ||||||||||||||||||||||||| |||||||    
T  1806238 cccacatggtttggtgggacccaagtgagttttaactagtgaaataaagtatgttgaaaagtatgtgttaaaatgtgtgttgctaacattcctc 1806331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 724 - 764
Target Start/End: Complemental strand, 8402636 - 8402596
Alignment:
Q  724 aatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  8402636 aatgctagcaacacacattttaacacacacttttcaacaca 8402596  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 796 - 866
Target Start/End: Original strand, 21125022 - 21125092
Alignment:
Q  796 ccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaa 866  Q
    ||||||||||||||||||| ||||| | || ||| |||||||| ||| | ||||||||| |||||||||||    
T  21125022 ccacatgatttgatgagacccatgtaaattttaatcaatcaaatagaatgtgttaaaaagtatgtgttaaa 21125092  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 789 - 888
Target Start/End: Original strand, 8402543 - 8402640
Alignment:
Q  789 atggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    |||| |||||||||||||| || | | |||| ||||| |||||||||||| || ||  ||| |||| | ||||||||||||||||||||||  |||||||    
T  8402543 atgggtcccacatgatttggtggggcccatgagagttttaaccaatcaaatagtgt--gttgaaaagtgtgtgttaaaatgtgtgttgctagcattcctc 8402640  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 20271177 - 20271133
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||| |||||||||| |||||||||| ||||||||||||||    
T  20271177 gagaaatgttagcaacacacattttaacacgcacttttcaacaca 20271133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 21057805 - 21057761
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||| |||||||||| |||||||||| ||||||||||||||    
T  21057805 gagaaatgttagcaacacacattttaacacgcacttttcaacaca 21057761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Original strand, 36009847 - 36009891
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||| ||| ||||||||||||| |||||||    
T  36009847 gagaaatgctagcaacacacattctaacacacactttccaacaca 36009891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 788 - 888
Target Start/End: Complemental strand, 38357644 - 38357544
Alignment:
Q  788 catggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcct 887  Q
    |||||| ||||||||||||| || | ||||||||||||  ||| ||||||| ||||| ||||  ||| | |||| || ||||||||||||||  ||||||    
T  38357644 catggaacccacatgatttggtgggtctcatgtgagtttcaactaatcaaagagagtgtgttggaaagtgtgtgctagaatgtgtgttgctagcattcct 38357545  T
Q  888 c 888  Q
    |    
T  38357544 c 38357544  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 879
Target Start/End: Original strand, 40694684 - 40694768
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||||||| || ||| ||||||| || |||| ||| ||||||||| | || |||| | |||||||||| |||||||||||    
T  40694684 cccacatgatttggtgggacccatgtgaattttaactaataaaaaagagtgtattgaaaagtgtgtgttaaaacgtgtgttgcta 40694768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 385 - 419
Target Start/End: Original strand, 4219745 - 4219779
Alignment:
Q  385 ccatttattccttctatctaattaattaataaact 419  Q
    ||||||||||||||||||||||||||||| |||||    
T  4219745 ccatttattccttctatctaattaattaacaaact 4219779  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 668 - 718
Target Start/End: Original strand, 4220323 - 4220373
Alignment:
Q  668 aataatttttatttgtcggtgaaacctcaaacaaatttaaatacatagata 718  Q
    |||||||||||||| | |||||| ||| ||||||||||||||| |||||||    
T  4220323 aataatttttatttataggtgaagcctaaaacaaatttaaatagatagata 4220373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 904 - 937
Target Start/End: Original strand, 4221354 - 4221387
Alignment:
Q  904 cgtttgtaatcacttgaataatctcaattcataa 937  Q
    |||||| |||||||||||||||||||||||||||    
T  4221354 cgtttggaatcacttgaataatctcaattcataa 4221387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 838 - 879
Target Start/End: Original strand, 4994267 - 4994308
Alignment:
Q  838 aaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||| ||||||||| | ||||||||||||||||||||||    
T  4994267 aaagagtgtgttaaaaattgtgtgttaaaatgtgtgttgcta 4994308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 815 - 880
Target Start/End: Original strand, 20271104 - 20271169
Alignment:
Q  815 tcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaa 880  Q
    |||||||| || |||| ||||||| ||||| |||| |||| |  ||||||||||||||||||||||    
T  20271104 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgctaa 20271169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 815 - 880
Target Start/End: Original strand, 21057732 - 21057797
Alignment:
Q  815 tcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaa 880  Q
    |||||||| || |||| ||||||| ||||| |||| |||| |  ||||||||||||||||||||||    
T  21057732 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgctaa 21057797  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 723 - 764
Target Start/End: Complemental strand, 23848400 - 23848359
Alignment:
Q  723 aaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||||||||| || | |||||||||||    
T  23848400 aaatgctagcaacacatattttaacgcataattttcaacaca 23848359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 797 - 888
Target Start/End: Original strand, 136394 - 136485
Alignment:
Q  797 cacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    |||||||||||||| ||| |||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||| ||||||  |||||||    
T  136394 cacatgatttgatgggacacatgtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgtgtattgctagcattcctc 136485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 795 - 876
Target Start/End: Original strand, 45654082 - 45654163
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttg 876  Q
    |||||||||||||||| ||  ||||||| || |||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  45654082 cccacatgatttgatgggatccatgtgaattttaaccaatcaaaaaaagtgtgttaaaaaatatgtgttagaatgtatgttg 45654163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 795 - 876
Target Start/End: Complemental strand, 2324826 - 2324745
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttg 876  Q
    ||||||||||||| ||| |||||||||| || |||||||||||| ||||||| || |||| | || ||||||||||||||||    
T  2324826 cccacatgatttggtgaaactcatgtgaattttaaccaatcaaagagagtatattgaaaagtgtgcgttaaaatgtgtgttg 2324745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 814 - 875
Target Start/End: Complemental strand, 21433922 - 21433861
Alignment:
Q  814 ctcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgtt 875  Q
    ||||||||| || |||||||||||| ||||| |||| |||||| ||||||||||||||||||    
T  21433922 ctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgtgtt 21433861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 16458083 - 16458039
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||    
T  16458083 gagaaatgctagcaacacacattctaacacacacttttcaacaca 16458039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 29566106 - 29566062
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||||||||||||| |||||||||||| |||||||||||||    
T  29566106 gagaaatgctagcaacacgtattttaacacatacttttcaacaca 29566062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 716 - 764
Target Start/End: Original strand, 52374888 - 52374936
Alignment:
Q  716 atacgagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||||||    
T  52374888 atacgaggaatgctaacaacacacattttaacacacacttttcaacaca 52374936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 721 - 764
Target Start/End: Complemental strand, 7403246 - 7403203
Alignment:
Q  721 agaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  7403246 agaaattctagcaacacatattttaacacacactattcaacaca 7403203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 788 - 874
Target Start/End: Original strand, 17508828 - 17508914
Alignment:
Q  788 catggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgt 874  Q
    ||||||| | || ||||||| || |||||||||||  | ||| ||||||||||||  ||| | ||||||||||||||||||||||||    
T  17508828 catggattctacctgatttggtgggactcatgtgatatttaatcaatcaaaaagaaaatggtgaaaaatatgtgttaaaatgtgtgt 17508914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 831 - 880
Target Start/End: Complemental strand, 41840625 - 41840576
Alignment:
Q  831 caatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaa 880  Q
    |||||||| ||||| |||| |||||||||||||||||||| |||||||||    
T  41840625 caatcaaagagagtgtgttgaaaaatatgtgttaaaatgtatgttgctaa 41840576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 731 - 764
Target Start/End: Complemental strand, 42516598 - 42516565
Alignment:
Q  731 gcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||||||||||||||||||    
T  42516598 gcaacacatattttaacacacacttttcaacaca 42516565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Original strand, 15134542 - 15134586
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||||||| |||||| ||||||||||||| |||||||||||    
T  15134542 gagaaatgctagtaacacaaattttaacacacatttttcaacaca 15134586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 863
Target Start/End: Complemental strand, 16457988 - 16457920
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgtt 863  Q
    |||||||||||||||| ||  ||||||| || |||||||||||| ||||| ||||| ||||| ||||||    
T  16457988 cccacatgatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttagaaaatgtgtgtt 16457920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 795 - 879
Target Start/End: Original strand, 21433944 - 21434028
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||||||| || ||  ||||||| || |||||||||||  ||||| |||| |||| | | ||||||||||||||||||||    
T  21433944 cccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtgttgcta 21434028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 720 - 838
Target Start/End: Complemental strand, 993361 - 993242
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca-nnnnnnnnatcggttaaaattcgcatggatcccacatgatttgatgagactcat 818  Q
    ||||||||||||||||||| || |||||||||||||| ||||| |         ||  |||| ||||| |||||  ||||||||||||| || |||||||    
T  993361 gagaaatgctagcaacacacatcttaacacacactttccaacaaactctctttgatttgttagaattcacatgggacccacatgatttggtgggactcat 993262  T
Q  819 gtgagttctaaccaatcaaa 838  Q
    |||| || ||||||||||||    
T  993261 gtgaattttaaccaatcaaa 993242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 733 - 764
Target Start/End: Original strand, 2247568 - 2247599
Alignment:
Q  733 aacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||||||||||||||||    
T  2247568 aacacatattttaacacacacttttcaacaca 2247599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 797 - 872
Target Start/End: Complemental strand, 9023976 - 9023901
Alignment:
Q  797 cacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgt 872  Q
    ||||||||||| || ||||||||||| || || |||||||||||  || ||||||||| | | |||||||||||||    
T  9023976 cacatgatttgttgggactcatgtgaattttacccaatcaaaaaacgtgtgttaaaaagtgtatgttaaaatgtgt 9023901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 816 - 879
Target Start/End: Original strand, 32286323 - 32286386
Alignment:
Q  816 catgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||| || |||||||| ||||||||| |||| |||||||| |||| ||| |||||||||||    
T  32286323 catgtgaattttaaccaataaaaaagagtgtgttgaaaaatatatgttgaaacgtgtgttgcta 32286386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 795 - 889
Target Start/End: Complemental strand, 52374985 - 52374891
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctcg 889  Q
    ||||||| ||||| |||||  ||||||| || ||| | |||||| ||||| |||| |||| | ||||||||||||||||||| ||  ||||||||    
T  52374985 cccacataatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcattcctcg 52374891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 813 - 879
Target Start/End: Original strand, 4787806 - 4787872
Alignment:
Q  813 actcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||||||| |||||||||||| ||||  ||||||||||| | ||||||||||||||||||||    
T  4787806 actcatgtgagttttaaccaatcaaagagagactgttaaaaaatgtatgttaaaatgtgtgttgcta 4787872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 814 - 887
Target Start/End: Original strand, 17600695 - 17600768
Alignment:
Q  814 ctcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcct 887  Q
    |||||||||||| |||||||||||| ||| |||||| |||||| | ||||||||||||||||| ||| ||||||    
T  17600695 ctcatgtgagttttaaccaatcaaagagaatatgttgaaaaatgtttgttaaaatgtgtgttgttaacattcct 17600768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 780 - 879
Target Start/End: Complemental strand, 1473698 - 1473599
Alignment:
Q  780 aaaattcgcatggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||| |||||  ||||||||||||| ||  || ||||||| || |||||||||||| | ||| |||| |||||| ||| ||||||||||||||||||    
T  1473698 aaaattcacatgggacccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgttgcta 1473599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 879
Target Start/End: Original strand, 5706726 - 5706774
Alignment:
Q  831 caatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||||| ||||| |||| |||| ||||||||||||||||||||||||    
T  5706726 caatcaaagagagtgtgttgaaaagtatgtgttaaaatgtgtgttgcta 5706774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 5706783 - 5706739
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||| |||||||||| ||||||||||| |||||||||||||    
T  5706783 gagaaatgatagcaacacacattttaacacatacttttcaacaca 5706739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 764
Target Start/End: Original strand, 12731525 - 12731573
Alignment:
Q  716 atacgagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||||||| |||||||||||||| ||| |||||||| ||||||||    
T  12731525 atacgagaaatgttagcaacacatattctaatacacacttctcaacaca 12731573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 831 - 879
Target Start/End: Complemental strand, 19711670 - 19711622
Alignment:
Q  831 caatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||| |||| |||||| || |||||||||||||||||||||||||||||    
T  19711670 caattaaaacgagtatattgaaaaatatgtgttaaaatgtgtgttgcta 19711622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 724 - 764
Target Start/End: Complemental strand, 31946978 - 31946938
Alignment:
Q  724 aatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  31946978 aatgctagcaacacacattctaacacacacttttcaacaca 31946938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 720 - 763
Target Start/End: Complemental strand, 4483530 - 4483487
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacac 763  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||    
T  4483530 gagaaatactagcaacacacattttaacacgcacttttcaacac 4483487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 720 - 763
Target Start/End: Complemental strand, 17390061 - 17390018
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacac 763  Q
    ||||||||||||||||||| |||||||||| || ||||||||||    
T  17390061 gagaaatgctagcaacacacattttaacacgcaattttcaacac 17390018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 721 - 764
Target Start/End: Complemental strand, 24691967 - 24691924
Alignment:
Q  721 agaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||    
T  24691967 agaaatgttagcaacacacattttaacacacactttccaacaca 24691924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 807 - 876
Target Start/End: Original strand, 4033075 - 4033144
Alignment:
Q  807 gatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttg 876  Q
    |||||||||| ||||| || |||||||||||| | ||| | || |||| | |||||||||||||||||||    
T  4033075 gatgagactcgtgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgtgttg 4033144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 814 - 863
Target Start/End: Complemental strand, 9358268 - 9358219
Alignment:
Q  814 ctcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgtt 863  Q
    ||||||||| || |||||||||||| | | ||||||||||||||||||||    
T  9358268 ctcatgtgaattttaaccaatcaaatataatatgttaaaaaatatgtgtt 9358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 720 - 757
Target Start/End: Original strand, 9644892 - 9644929
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacactttt 757  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  9644892 gagaaatgctagcaatacatattttaacacacattttt 9644929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 720 - 757
Target Start/End: Original strand, 9650909 - 9650946
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacactttt 757  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  9650909 gagaaatgctagcaatacatattttaacacacattttt 9650946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 827 - 888
Target Start/End: Original strand, 12731657 - 12731718
Alignment:
Q  827 taaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    |||||||||||||||||| ||||  ||||| ||||||| ||| ||||||||||  |||||||    
T  12731657 taaccaatcaaaaagagtgtgttggaaaatgtgtgttataatatgtgttgctagcattcctc 12731718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 795 - 885
Target Start/End: Complemental strand, 38663719 - 38663629
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattc 885  Q
    |||| |||||||| || |||  |||||| || |||||||||||| ||||| |||| ||||||||||||||||||||||||| |||| ||||    
T  38663719 cccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtgttactaacattc 38663629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 764
Target Start/End: Original strand, 7444256 - 7444300
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  7444256 gagaaatgctagcaacacacattttaacacacatttttcaacaca 7444300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 729 - 764
Target Start/End: Original strand, 5695662 - 5695697
Alignment:
Q  729 tagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||||||||||||||||||||    
T  5695662 tagcaacacatattttaacacacacttttcaacaca 5695697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 789 - 864
Target Start/End: Complemental strand, 49403546 - 49403471
Alignment:
Q  789 atggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgtta 864  Q
    ||||| ||||||| |||||||| |||| |||||| || |||||||||| ||| | ||||||||||||| |||||||    
T  49403546 atggaacccacataatttgatgggacttatgtgaattttaaccaatcataaaaaatatgttaaaaaatgtgtgtta 49403471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 789 - 863
Target Start/End: Complemental strand, 34437672 - 34437598
Alignment:
Q  789 atggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgtt 863  Q
    |||| |||||||||||||| || ||| ||||||| || |||||||||||| ||||| |||| |||||| ||||||    
T  34437672 atgggtcccacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 796 - 845
Target Start/End: Complemental strand, 4713317 - 4713268
Alignment:
Q  796 ccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagta 845  Q
    |||||||||||||| ||||| |||||| || |||||||||||||||||||    
T  4713317 ccacatgatttgataagacttatgtgaattttaaccaatcaaaaagagta 4713268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 803 - 888
Target Start/End: Original strand, 49822607 - 49822692
Alignment:
Q  803 atttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    |||||||| ||  ||||||| || |||||||||||| ||||| |||| |||||| ||||||| ||| ||||||||||  |||||||    
T  49822607 atttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttataatatgtgttgctagcattcctc 49822692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 34437761 - 34437717
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||| |||||||||||| |||||||||| ||||||||||||||    
T  34437761 gagaaacgctagcaacacacattttaacacgcacttttcaacaca 34437717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 789 - 853
Target Start/End: Complemental strand, 40669003 - 40668939
Alignment:
Q  789 atggatcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaa 853  Q
    |||| |||||||| ||||  |||||| |||||||||| |||||||||||| ||||| ||||||||    
T  40669003 atgggtcccacataattttgtgagacccatgtgagttttaaccaatcaaagagagtgtgttaaaa 40668939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 724 - 764
Target Start/End: Complemental strand, 49822688 - 49822648
Alignment:
Q  724 aatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  49822688 aatgctagcaacacatattataacacacatttttcaacaca 49822648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 729 - 764
Target Start/End: Original strand, 21281461 - 21281496
Alignment:
Q  729 tagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||||||||||||||| |||||||||||||||    
T  21281461 tagcaacacatattttaacatacacttttcaacaca 21281496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 816 - 879
Target Start/End: Original strand, 34437689 - 34437752
Alignment:
Q  816 catgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||| || |||||||||||| ||||| |||| |||| |  |||||||||||||||||||||    
T  34437689 catgtgaattttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgcta 34437752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 5388858 - 5388903
Alignment:
Q  511 ctcacgcaaaatcaaatttaattcattcact--tcatttaaggaaa 554  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||    
T  5388858 ctcacgcaaaaccaaatttaattcattcacttctcatttaaggaaa 5388903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 40669091 - 40669049
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||| ||||||||  |||||||||||||||    
T  40669091 gagaaatgctagcaacacacattttaac--acacttttcaacaca 40669049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 795 - 879
Target Start/End: Complemental strand, 29955106 - 29955022
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||||||||||||| ||| ||||||| || |||||||||||||| ||| |||| |||| ||||| ||||||| | ||||||||    
T  29955106 cccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgcta 29955022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 795 - 879
Target Start/End: Complemental strand, 30004260 - 30004176
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||||||||||||| ||| ||||||| || |||||||||||||| ||| |||| |||| ||||| ||||||| | ||||||||    
T  30004260 cccacatgatttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgcta 30004176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 795 - 879
Target Start/End: Original strand, 36480778 - 36480862
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||||||| || ||| ||||||| || || ||||||||| |||| ||||| |||| | ||||||||||||||||||||||    
T  36480778 cccacatgatttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaaaagtgtgtgttaaaatgtgtgttgcta 36480862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 816 - 879
Target Start/End: Complemental strand, 35357364 - 35357301
Alignment:
Q  816 catgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||||||| |||||||||||| ||||| |||| |||||||| ||||| ||||||||||||||    
T  35357364 catgtgagttttaaccaatcaaagagagtgtgttgaaaaatatttgttagaatgtgtgttgcta 35357301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 795 - 878
Target Start/End: Original strand, 51541316 - 51541399
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgct 878  Q
    ||||||||||||| || ||||||| ||| || |||||||||||||| ||| | || |||||||||||||| || ||||||||||    
T  51541316 cccacatgatttggtgggactcatctgaattttaaccaatcaaaaaaagtgtattgaaaaatatgtgttagaaggtgtgttgct 51541399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 795 - 876
Target Start/End: Complemental strand, 31205437 - 31205356
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttg 876  Q
    ||||||||||||| | |||| ||||| | || |||||||||||| ||||| ||||  |||||||||||||||| ||||||||    
T  31205437 cccacatgatttggtaagacccatgtaaattttaaccaatcaaagagagtgtgttggaaaatatgtgttaaaacgtgtgttg 31205356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 815 - 879
Target Start/End: Original strand, 37189235 - 37189299
Alignment:
Q  815 tcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||||| || |||||||||||| ||||| ||||||||||| | | ||||||||||||||||||    
T  37189235 tcatgtgaattttaaccaatcaaagagagtctgttaaaaaatgtatattaaaatgtgtgttgcta 37189299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 814 - 889
Target Start/End: Complemental strand, 14345200 - 14345125
Alignment:
Q  814 ctcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctcg 889  Q
    ||||||||  || |||||||||||| | ||| |||| |||||||||||||||||| ||||||||||| ||| ||||    
T  14345200 ctcatgtggattttaaccaatcaaagaaagtgtgttgaaaaatatgtgttaaaatatgtgttgctaacatttctcg 14345125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 796 - 846
Target Start/End: Complemental strand, 1753383 - 1753333
Alignment:
Q  796 ccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtat 846  Q
    |||||||||||||||| |||||||| | || ||||||||||||||||||||    
T  1753383 ccacatgatttgatgaaactcatgtaaattttaaccaatcaaaaagagtat 1753333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 718 - 764
Target Start/End: Original strand, 14345124 - 14345170
Alignment:
Q  718 acgagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||    
T  14345124 acgagaaatgttagcaacacatattttaacacatatttttcaacaca 14345170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 724 - 762
Target Start/End: Complemental strand, 36480867 - 36480829
Alignment:
Q  724 aatgctagcaacacatattttaacacacacttttcaaca 762  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  36480867 aatgctagcaacacacattttaacacacacttttcaaca 36480829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 796 - 875
Target Start/End: Complemental strand, 32881064 - 32880985
Alignment:
Q  796 ccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgtt 875  Q
    |||||||||||  || ||| ||||||| |  |||||||||||  |||||||||| |||||| |||| |||||||||||||    
T  32881064 ccacatgattttgtgggacccatgtgaatattaaccaatcaaggagagtatgttgaaaaatgtgtgataaaatgtgtgtt 32880985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 797 - 863
Target Start/End: Complemental strand, 3901565 - 3901499
Alignment:
Q  797 cacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgtt 863  Q
    ||||||||||| || ||| ||||||| || |||||||||||| ||| | |||| |||||||||||||    
T  3901565 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgttgaaaaatatgtgtt 3901499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 724 - 762
Target Start/End: Complemental strand, 35415129 - 35415091
Alignment:
Q  724 aatgctagcaacacatattttaacacacacttttcaaca 762  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  35415129 aatgctaacaacacacattttaacacacacttttcaaca 35415091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 797 - 866
Target Start/End: Original strand, 3901566 - 3901635
Alignment:
Q  797 cacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaa 866  Q
    ||||||||||| || ||| ||||||| || |||||||||||| ||||| |||| |||| | |||||||||    
T  3901566 cacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttaaa 3901635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 846 - 879
Target Start/End: Complemental strand, 36046362 - 36046329
Alignment:
Q  846 tgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||| ||||||||||||||||||||||||    
T  36046362 tgttaaaaagtatgtgttaaaatgtgtgttgcta 36046329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 853
Target Start/End: Original strand, 48543454 - 48543511
Alignment:
Q  796 ccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaa 853  Q
    |||| |||||||||||||||||||||| || |||||||| ||| ||||| | ||||||    
T  48543454 ccacgtgatttgatgagactcatgtgaattttaaccaattaaagagagtgtattaaaa 48543511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 795 - 888
Target Start/End: Complemental strand, 18719799 - 18719708
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    ||||||||||||| ||  |||| ||||| || |||||||||||||||||| |||| ||||  |||||||| ||||||||||||||  |||||||    
T  18719799 cccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaa--atgtgttagaatgtgtgttgctagcattcctc 18719708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 795 - 879
Target Start/End: Original strand, 42094274 - 42094357
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||||||| || ||| ||||||| || |||||||||||| || || |||| |||| | ||||||||||||||||||||||    
T  42094274 cccacatgatttggtgggac-catgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtgttgcta 42094357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 724 - 764
Target Start/End: Complemental strand, 42094362 - 42094322
Alignment:
Q  724 aatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  42094362 aatgctagcaacacacattttaacacacacttttcaacaca 42094322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 800 - 879
Target Start/End: Complemental strand, 12703535 - 12703456
Alignment:
Q  800 atgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||||||||  |||||||||| |  |||||||||||| | ||| | || |||||| ||||||||||||||||||||||    
T  12703535 atgatttgatggaactcatgtgaatattaaccaatcaaagaaagtgtattgaaaaatgtgtgttaaaatgtgtgttgcta 12703456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 720 - 761
Target Start/End: Complemental strand, 16209539 - 16209498
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaac 761  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  16209539 gagaaatgctagcaacacatattctaacatacacttttcaac 16209498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 816 - 872
Target Start/End: Complemental strand, 1469786 - 1469730
Alignment:
Q  816 catgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgt 872  Q
    ||||||| || |||||||| ||| ||||| |||| ||||||||||||||||||||||    
T  1469786 catgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgt 1469730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 816 - 888
Target Start/End: Original strand, 3466479 - 3466551
Alignment:
Q  816 catgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    ||||||| || |||||||||||| ||| ||||||  ||| | ||||||||||||||||||||||  |||||||    
T  3466479 catgtgaattttaaccaatcaaagagactatgtttgaaagtgtgtgttaaaatgtgtgttgctagcattcctc 3466551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 25666962 - 25666918
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||    
T  25666962 gagaaatgctagcaacacacattttaacatacaattttcaacaca 25666918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 730 - 764
Target Start/End: Complemental strand, 6979150 - 6979116
Alignment:
Q  730 agcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||| |||||||||||||||||||||||||    
T  6979150 agcaacacacattttaacacacacttttcaacaca 6979116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 487 - 560
Target Start/End: Original strand, 13563720 - 13563796
Alignment:
Q  487 tttcaatttt-tgaaaataattttcctcacgcaaaatcaaatttaattcattcactt--catttaaggaaaaaagta 560  Q
    |||||||||| | |||||||| |||||||||||||  ||| |||||| |||||||||  ||||||||||||| ||||    
T  13563720 tttcaattttgtaaaaataatattcctcacgcaaacccaactttaatccattcacttcacatttaaggaaaacagta 13563796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 834 - 879
Target Start/End: Original strand, 30841085 - 30841130
Alignment:
Q  834 tcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||| ||||| ||||||||||||||||||| ||||||| ||||||    
T  30841085 tcaaagagagtgtgttaaaaaatatgtgttataatgtgtattgcta 30841130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 800 - 853
Target Start/End: Complemental strand, 44487216 - 44487163
Alignment:
Q  800 atgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaa 853  Q
    |||||||| |||||||||||||| || |||||||||||| | |||| |||||||    
T  44487216 atgatttggtgagactcatgtgaattttaaccaatcaaagatagtaagttaaaa 44487163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 764
Target Start/End: Original strand, 33029469 - 33029513
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  33029469 gagaaatgctagcaacacatattttaacatatacttttcaacaca 33029513  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 41169554 - 41169510
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||||||||||| |||||||||||||||||||| |||||||||||    
T  41169554 gagaaatgctagtaacacatattttaacacacatttttcaacaca 41169510  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 794 - 863
Target Start/End: Original strand, 4158149 - 4158218
Alignment:
Q  794 tcccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgtt 863  Q
    |||||||| |||||||| || || ||||| || |||||||||||| ||||||| ||||||||| ||||||    
T  4158149 tcccacataatttgatgggattcgtgtgaattttaaccaatcaaagagagtatattaaaaaatgtgtgtt 4158218  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 715 - 764
Target Start/End: Complemental strand, 35244989 - 35244940
Alignment:
Q  715 gatacgagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||| ||||||||||||||||||| ||||||||| |||||| ||||||||    
T  35244989 gataagagaaatgctagcaacacacattttaacatacacttgtcaacaca 35244940  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Original strand, 3907631 - 3907675
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||    
T  3907631 gagaaatgctagcaacacacattctaacaaacacttttcaacaca 3907675  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 720 - 764
Target Start/End: Complemental strand, 4190225 - 4190181
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||    
T  4190225 gagaaatgctagcaacatacattctaacacacacttttcaacaca 4190181  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 720 - 754
Target Start/End: Complemental strand, 9999829 - 9999795
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacact 754  Q
    ||||||||||||||||||| |||||||||||||||    
T  9999829 gagaaatgctagcaacacacattttaacacacact 9999795  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 814 - 879
Target Start/End: Complemental strand, 25545267 - 25545204
Alignment:
Q  814 ctcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    ||||||||| || ||||||||||||  |||| |||| |||||| ||||||||||||||| ||||||    
T  25545267 ctcatgtgaattttaaccaatcaaa--gagtgtgttgaaaaatgtgtgttaaaatgtgtattgcta 25545204  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 720 - 762
Target Start/End: Complemental strand, 26608621 - 26608579
Alignment:
Q  720 gagaaatgctagcaacacatattttaacacacacttttcaaca 762  Q
    |||||||| ||||||||||||||||| |||||| |||||||||    
T  26608621 gagaaatgttagcaacacatattttatcacacatttttcaaca 26608579  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 795 - 877
Target Start/End: Original strand, 36059278 - 36059360
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgc 877  Q
    |||||||||||||||| ||  ||||| | || |||||||||||| | ||| ||||  ||| ||||||||| ||||||||||||    
T  36059278 cccacatgatttgatgggatccatgtaaattttaaccaatcaaataaagtgtgttggaaagtatgtgttagaatgtgtgttgc 36059360  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 814 - 880
Target Start/End: Original strand, 42420107 - 42420173
Alignment:
Q  814 ctcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaa 880  Q
    |||||||||||| |||||||||||| ||||| |||| ||||   ||| ||| |||||||||||||||    
T  42420107 ctcatgtgagttttaaccaatcaaatagagtgtgttgaaaagcgtgttttagaatgtgtgttgctaa 42420173  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 723 - 756
Target Start/End: Complemental strand, 18247901 - 18247868
Alignment:
Q  723 aaatgctagcaacacatattttaacacacacttt 756  Q
    ||||||||| ||||||||||||||||||||||||    
T  18247901 aaatgctagtaacacatattttaacacacacttt 18247868  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 875
Target Start/End: Complemental strand, 38029607 - 38029531
Alignment:
Q  796 ccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgtt 875  Q
    |||||||||||| |||||| ||||||| || ||||||||||||   ||| ||||  ||||| ||||||| ||||||||||    
T  38029607 ccacatgatttggtgagacccatgtgaattttaaccaatcaaa---agtgtgttggaaaatgtgtgttagaatgtgtgtt 38029531  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 717 - 762
Target Start/End: Complemental strand, 40927773 - 40927728
Alignment:
Q  717 tacgagaaatgctagcaacacatattttaacacacacttttcaaca 762  Q
    |||||||||||||||||||||| ||| ||||||| | |||||||||    
T  40927773 tacgagaaatgctagcaacacacattataacacaaatttttcaaca 40927728  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 817 - 879
Target Start/End: Original strand, 5443622 - 5443684
Alignment:
Q  817 atgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||| || |||||||||||| | |||||||| |||||| ||||||| ||||||||||||||    
T  5443622 atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgcta 5443684  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 817 - 879
Target Start/End: Original strand, 5452667 - 5452729
Alignment:
Q  817 atgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||||| || |||||||||||| | |||||||| |||||| ||||||| ||||||||||||||    
T  5452667 atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgcta 5452729  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 723 - 760
Target Start/End: Complemental strand, 26327809 - 26327772
Alignment:
Q  723 aaatgctagcaacacatattttaacacacacttttcaa 760  Q
    |||||||||||||||||||||||||||| |||||||||    
T  26327809 aaatgctagcaacacatattttaacacatacttttcaa 26327772  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 795 - 888
Target Start/End: Original strand, 26862984 - 26863077
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgctaagattcctc 888  Q
    ||||||||||||| || ||| ||||||| || |||||||| ||| ||||| || | |||| | ||| ||||||||||||||||||  |||||||    
T  26862984 cccacatgatttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgtgttgctagcattcctc 26863077  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 795 - 876
Target Start/End: Original strand, 47497771 - 47497852
Alignment:
Q  795 cccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttg 876  Q
    ||||||| ||||| || ||||||||||| || |||||||||||| | | ||| || |||||| ||||||| |||||||||||    
T  47497771 cccacataatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgttagaatgtgtgttg 47497852  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 721 - 760
Target Start/End: Original strand, 31042115 - 31042154
Alignment:
Q  721 agaaatgctagcaacacatattttaacacacacttttcaa 760  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  31042115 agaaatggcagcaacacatattttaacacacacttttcaa 31042154  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 816 - 879
Target Start/End: Original strand, 31042395 - 31042458
Alignment:
Q  816 catgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttgcta 879  Q
    |||| ||||| |||||||||||| ||||||| ||||||| | | ||||||||| ||||||||||    
T  31042395 catgcgagttttaaccaatcaaagagagtatattaaaaagtgtatgttaaaatatgtgttgcta 31042458  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 718 - 756
Target Start/End: Original strand, 3235532 - 3235570
Alignment:
Q  718 acgagaaatgctagcaacacatattttaacacacacttt 756  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  3235532 acgagaaatgctaacaacacacattttaacacacacttt 3235570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 722 - 764
Target Start/End: Complemental strand, 12275900 - 12275858
Alignment:
Q  722 gaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||    
T  12275900 gaaatgctagcaacacacattctaacacacactttccaacaca 12275858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 803 - 876
Target Start/End: Complemental strand, 3235619 - 3235546
Alignment:
Q  803 atttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaaaatatgtgttaaaatgtgtgttg 876  Q
    |||||||| | ||||||||| || |||||||||||| ||||| | ||  ||| | |||||||||||||||||||    
T  3235619 atttgatgggtctcatgtgaattttaaccaatcaaagagagtgtattggaaagtgtgtgttaaaatgtgtgttg 3235546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 715 - 764
Target Start/End: Complemental strand, 40134553 - 40134504
Alignment:
Q  715 gatacgagaaatgctagcaacacatattttaacacacacttttcaacaca 764  Q
    |||| ||| |||||||||||| || ||||||||||||||||| |||||||    
T  40134553 gataagaggaatgctagcaacccacattttaacacacactttccaacaca 40134504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 853
Target Start/End: Original strand, 46074127 - 46074184
Alignment:
Q  796 ccacatgatttgatgagactcatgtgagttctaaccaatcaaaaagagtatgttaaaa 853  Q
    |||| |||||||||| ||||||||||| || |||||||| ||| ||||| ||||||||    
T  46074127 ccacgtgatttgatgggactcatgtgaattttaaccaattaaagagagtgtgttaaaa 46074184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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