View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282-Insertion-20 (Length: 497)

Name: NF3282-Insertion-20
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282-Insertion-20
NF3282-Insertion-20
[»] chr1 (1 HSPs)
chr1 (8-497)||(5871392-5871881)


Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 497
Target Start/End: Complemental strand, 5871881 - 5871392
Alignment:
Q  8 ccccttgtacagcagcttgaagaatacctttggtagtaaaatcaaatgcattaacaacgccgccgccattttcaacccagttaacaagttcacctctagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5871881 ccccttgtacagcagcttgaagaatacctttggtagtaaaatcaaatgcattaacaacgccgccaccattttcaacccagttaacaagttcacctctagc 5871782  T
Q  108 tgcatcttgattatagttgagttttccatcttgtccgtaagaaagcgaattccaatattctcccacggcaaaatctggcgaagtattttccatataaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5871781 tgcatcttgattatagttgagttttccatcttgtccgtaagaaagcgaattccaatattctcccacggcaaaatctggcgaagtattttccatataaatt 5871682  T
Q  208 tttgttatgctaggcgcatgacctttgacaaaatcaaatctccaaccagaaaatccaatttcagttttgagccaattcatccattcagataactcttttt 307  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5871681 tttgttatgctaggcgcataacctttgacaaaatcaaatctccaaccagaaaatccaatttcagttttgagccaattcatccattcagataactcttttt 5871582  T
Q  308 gtacttgaggattgggatgatcaatgtcaggtgcagcttgatagccctctccactatcgaggtttccggtgccatctgaataagcagtgtcatctttgca 407  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5871581 gtacttgaggattgagatgatcaatgtcaggtgcagcttgatagccctctccactatcgaggtttccagtgccatctgaataagcagtgtcatctttgca 5871482  T
Q  408 aatgaaagatgggccccaatcaagttttgaatcaggagtcccaccttcaaagaggcaatagatgcctctatcatcttttctttctgctgt 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5871481 aatgaaagatgggccccaatcaagttttgaatcaggagtcccaccttcaaagaggcaatagatgcctctatcatcttttctttctgctgt 5871392  T

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