View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3282-Insertion-21 (Length: 477)
Name: NF3282-Insertion-21
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-21 |
 | |
|
| [»] chr1 (14 HSPs) |
| |
|
| [»] scaffold0341 (2 HSPs) |
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|
Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 6510989 - 6511457
Alignment:
| Q |
8 |
aactatagtaataaagataataaaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctag |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6510989 |
aactatagaaataaagataataaaacctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctag |
6511088 |
T |
|
| Q |
108 |
gcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6511089 |
gcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgat |
6511188 |
T |
|
| Q |
208 |
aaccttttgacagcaacctcttgcccgttggagaacctaccctgaaaataaatattatttagtaatgataagctttaataacaagtgtaagagtataaca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6511189 |
aaccttttgacagcaacctcttgcccgttggagaacctaccctgaaaataaataatatttagtaatgataagctttaataacaagtgtaagagtataaca |
6511288 |
T |
|
| Q |
308 |
tattttaatttaattaataaagtaatgtttaattgtgctattttactttgtaaacaaacccaaatcctccttttccaagtttattagaatctgagaaatc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6511289 |
tattttaatttaattaataaagtaatgtttaatagtgctattttactttgtaaacaaacccaaatcctccttttccaagtttattagaatctgagaaatc |
6511388 |
T |
|
| Q |
408 |
atttgtagcaatacgcatggtgttgaagtcgaattgcagttgctcgggtagtaatattaattttgtcttc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6511389 |
atttgtagcaatacgcatggtgttgaagtcgaattgcagttgctc-ggtagtaatattaattttgtcttc |
6511457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 6503369 - 6503831
Alignment:
| Q |
8 |
aactatagtaataaagataataaaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctag |
107 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6503369 |
aactatagtaataaatataacaaaacctaccaaaaataaagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctag |
6503468 |
T |
|
| Q |
108 |
gcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgat |
207 |
Q |
| |
|
||| |||||||||||||| |||| ||||| ||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
6503469 |
gcaaaaaccgagtaatctaactagatttctgtgttgaagtttagcaactaaaaacacttcattcttaaactctgaatctccttgtccagaattcattgat |
6503568 |
T |
|
| Q |
208 |
aaccttttgacagcaacctcttgcccgttggagaacctaccctgaaaataaata--ttatttagtaatgataagctttaataacaagtgtaagagtataa |
305 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||| ||||||||||||||||||| |||||| ||| |||||| ||| ||||||| |||||||||| |
|
|
| T |
6503569 |
aaccttttgacagcaacctcttgtccattgaagagcctaccctgaaaataaataatatatttaataacgataagtttttataacaatcataagagtatat |
6503668 |
T |
|
| Q |
306 |
catattttaatttaattaataaagtaatgtttaattgtgctattttactttgtaaacaaacccaaatcctccttttccaagtttattagaatctgagaaa |
405 |
Q |
| |
|
||||| |||||||||||||| | |||||||| | | |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
6503669 |
catat-----tttaattaataaagcagtgtttaatggcgttattttactttgtaaacagccccaaatccgccttttccaagtttatcagaatctgagaaa |
6503763 |
T |
|
| Q |
406 |
tcatttgtagcaatacgcatggtgttgaagtcgaattgcagttgctcgggtagtaatattaattttgtc |
474 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
6503764 |
tcatttgtagcaatacgtatggtgttgaagtctaattgcagttgctc-ggtagtaatatcaattatgtc |
6503831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 436
Target Start/End: Original strand, 6498064 - 6498474
Alignment:
| Q |
22 |
agataataaaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagta |
121 |
Q |
| |
|
||||| |||||| |||||||||| || ||||| |||||||| || |||||||| ||||||| ||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
6498064 |
agatattaaaacttaccaaaaatgaaataatcgagacttttgttttgaacaaattcatatacaagtactctttctcttccttctagtgagaaaccgagta |
6498163 |
T |
|
| Q |
122 |
atcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagc |
221 |
Q |
| |
|
||| |||||||||||||||||||| |||||||| |||| ||| |||||||||||||| |||||||||||| ||| ||||||| |||||||| ||||| |
|
|
| T |
6498164 |
gtctaactaaatttcggtgttgaagcttagccaccaaaagtacctcattcttaaactccgaatctccttgtcccgaactcattgacaaccttttaacagc |
6498263 |
T |
|
| Q |
222 |
aacctcttgcccgttggagaacctaccctgaaaataaatattatttagtaatgataag-ctttaataacaagtgtaagagtataacatattttaatttaa |
320 |
Q |
| |
|
|| |||||| || ||||| | ||||||||||||||| ||||||||||| | ||||||| ||| | ||||||| | |||||||| ||||| ||||| |
|
|
| T |
6498264 |
aatctcttgtccattggatagcctaccctgaaaatatatattatttaggagtgataagtttttcaaaacaagtattagagtatatcatat-----tttaa |
6498358 |
T |
|
| Q |
321 |
ttaataaagtaatgtttaattgtgctattttactttgtaaacaaacccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagcaata |
420 |
Q |
| |
|
||||| |||| ||||||||| ||| ||||||||||||||||||| || ||||| |||| |||||||| |||||||| ||||| |||||||||||| || |
|
|
| T |
6498359 |
ttaatgaagtgatgtttaatagtgttattttactttgtaaacaactccgaatccgccttctccaagttgattagaatgcgagaagtcatttgtagcatta |
6498458 |
T |
|
| Q |
421 |
cgcatggtgttgaagt |
436 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
6498459 |
cgtatggtgttgaagt |
6498474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 6515415 - 6515692
Alignment:
| Q |
11 |
tatagtaataaagataataaaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggca |
110 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
6515415 |
tatagtaataaggatatcaaaacctaccaaaaataaagtaatcaagacttttattatgaacaaactcgtatataagtagtctttcactcccttctaggca |
6515514 |
T |
|
| Q |
111 |
gaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataac |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6515515 |
gaaaccgagtaatctaactaaatttcggtgttgaagtttagccaggaaaaacacctcattcttaaactctagatctccttgtccagaattcattgataac |
6515614 |
T |
|
| Q |
211 |
cttttgacagcaacctcttgcccgttggagaacctaccctgaaaataaatattatttagtaatgataagctttaataa |
288 |
Q |
| |
|
||||||| ||| | ||| | || || |||| |||||||| ||||||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
6515615 |
cttttgatagcgatttctagtccattagagagcctaccctaaaaataaatatcatttaataatgataagttttcataa |
6515692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 6525090 - 6524861
Alignment:
| Q |
28 |
taaaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatctta |
127 |
Q |
| |
|
|||||||||||||||| |||||||| || || || || |||||||| ||||||| ||||||||||||||||||||||| |||||||| |||| || | |
|
|
| T |
6525090 |
taaaacctaccaaaaaggaagtaatcgaggctcttattctgaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaa |
6524991 |
T |
|
| Q |
128 |
ctaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaacctc |
227 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||| || |||| | | || |||||||||||| ||| ||| |
|
|
| T |
6524990 |
ctaagtttcgatgttgaagtttagccactaaaactacttcattcttaaattctaaatctccttggccagaatccctcgacaaccttttgacaccaatctc |
6524891 |
T |
|
| Q |
228 |
ttgcccgttggagaacctaccctgaaaata |
257 |
Q |
| |
|
||| || |||| || |||||||||||||| |
|
|
| T |
6524890 |
ttgtccattggggagtctaccctgaaaata |
6524861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 321 - 447
Target Start/End: Original strand, 6515901 - 6516027
Alignment:
| Q |
321 |
ttaataaagtaatgtttaattgtgctattttactttgtaaacaaacccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagcaata |
420 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| || |||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6515901 |
ttaataaagtaatgtttaatagtgttattttactttgtaaacaactccgaatcctccttgtccaagtttatcagaatctgagaaatcatttgtagcaata |
6516000 |
T |
|
| Q |
421 |
cgcatggtgttgaagtcgaattgcagt |
447 |
Q |
| |
|
|| ||||||||||||| |||||||||| |
|
|
| T |
6516001 |
cgtatggtgttgaagtggaattgcagt |
6516027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 47711873 - 47712063
Alignment:
| Q |
33 |
cctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
132 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || ||||||| ||||| ||||| | |||||||||||||||||| || ||||| |||| ||| |||||| |
|
|
| T |
47711873 |
cctaccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
47711972 |
T |
|
| Q |
133 |
tttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
223 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| |||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
47711973 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgactgcaa |
47712063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 47716624 - 47716808
Alignment:
| Q |
33 |
cctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
132 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||| ||||||| ||||| | ||| | |||||||||||||||||| || ||||| |||| || |||||| |
|
|
| T |
47716624 |
cctaccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttccttctagacaaaaaccaagtagtcaaactaaa |
47716723 |
T |
|
| Q |
133 |
tttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttga |
217 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| |||||||| ||||| |||| |||||||||| |
|
|
| T |
47716724 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttga |
47716808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 47744388 - 47744578
Alignment:
| Q |
33 |
cctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
132 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || ||||| | ||||| | ||| | |||||||||||||||||| || ||||| |||| ||| |||||| |
|
|
| T |
47744388 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
47744487 |
T |
|
| Q |
133 |
tttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
223 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| |||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
47744488 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaa |
47744578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 47758771 - 47758961
Alignment:
| Q |
33 |
cctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
132 |
Q |
| |
|
||||||||| ||||| |||||||||||||| || ||||| | ||||| | ||| | ||||||||||||||| || || ||||| |||| || |||||| |
|
|
| T |
47758771 |
cctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagacaaaaaccaagtagtcgaactaaa |
47758870 |
T |
|
| Q |
133 |
tttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
223 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| || ||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
47758871 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaaccttttgactgcaa |
47758961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 47770788 - 47770627
Alignment:
| Q |
30 |
aaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttact |
129 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||| || |||||| ||||| ||||| |||||||| || ||||||| | |||||| || | ||| ||| |
|
|
| T |
47770788 |
aaacgtaccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaact |
47770689 |
T |
|
| Q |
130 |
aaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttg |
191 |
Q |
| |
|
|||||||| |||||||| || || ||||| ||||||||||| ||||| || | ||||||||| |
|
|
| T |
47770688 |
aaatttcgatgttgaagcttggctactaataatacttcatttttaaattccacatctccttg |
47770627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 47774680 - 47774535
Alignment:
| Q |
46 |
aagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaa |
145 |
Q |
| |
|
||||||||||||||||| || |||| | ||||| ||||| ||| ||||||| ||||||| | |||||| |||| || ||||||||||| ||||||| |
|
|
| T |
47774680 |
aagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgatgttgaa |
47774581 |
T |
|
| Q |
146 |
gtttagccactaaaaatacttcattcttaaactctagatctccttg |
191 |
Q |
| |
|
|||| || ||||||| ||||||||| ||||| || | ||||||||| |
|
|
| T |
47774580 |
gtttggctactaaaagtacttcatttttaaattccacatctccttg |
47774535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 47678617 - 47678520
Alignment:
| Q |
49 |
taatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag |
146 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| ||||| |||||| ||| || || ||||||||| | || | ||||||||||| |||||||| |
|
|
| T |
47678617 |
taatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaag |
47678520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 47689903 - 47689806
Alignment:
| Q |
49 |
taatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag |
146 |
Q |
| |
|
|||||||||||||| || ||||||||||| || ||||||||||||||| || || |||||||| |||| | | ||||||||||| |||||||| |
|
|
| T |
47689903 |
taatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgatgttgaag |
47689806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 12670 - 13136
Alignment:
| Q |
8 |
aactatagtaataaagataataaaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctag |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12670 |
aactatagaaataaagataataaaacctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctag |
12769 |
T |
|
| Q |
108 |
gcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12770 |
gcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaa-tacttcattcttaaactctagatctccttgtccggaattcattgat |
12868 |
T |
|
| Q |
208 |
aaccttttgacagcaacctcttgcccgttggagaacctaccctgaaaataaatattatttagtaatgataagctttaataacaagtgtaagagtataaca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12869 |
aaccttttgacagcaacctcttgcccgttggagaacctaccctgaaaataaataatatttagtaatgataagctttaataacaagtgtaagagtataaca |
12968 |
T |
|
| Q |
308 |
tattttaatttaattaataaagtaatgtttaattgtgctattttactttgtaaacaaacccaaatcctccttttccaagtttattagaatctgagaaatc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12969 |
tattttaatttaattaataaagtaatgtttaatagtgctattttactttgtaaacaaacccaaatcctcc-tttccaagtttattagaatctgagaaatc |
13067 |
T |
|
| Q |
408 |
atttgtagcaatacgcatggtgttgaagtcgaattgcagttgctcgggtagtaatattaattttgtcttc |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13068 |
atttgtagcaatacgcatggtgttgaagtcgaattgcagttgctc-ggtagtaatattaattttgtcttc |
13136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 5048 - 5513
Alignment:
| Q |
8 |
aactatagtaataaagataataaaacctacc--aaaaataaa-gtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttc |
104 |
Q |
| |
|
||||||||||||||| |||| |||||||| | ||||||||| ||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
5048 |
aactatagtaataaatataacaaaacctaaccaaaaaataaaagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttc |
5147 |
T |
|
| Q |
105 |
taggcagaaaccgagtaatcttactaaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcatt |
204 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||| ||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
5148 |
taggcaaaaaccgagtaatctaactagatttctgtgttgaagtttagcaactaaaaacacttcattcttaaactctgaatctccttgtccagaattcatt |
5247 |
T |
|
| Q |
205 |
gataaccttttgacagcaacctcttgcccgttggagaacctaccctgaaaataaata--ttatttagtaatgataagctttaataacaagtgtaagagta |
302 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||| |||||| ||| |||||| ||| ||||||| |||||||| |
|
|
| T |
5248 |
gataaccttttgacagcaacctcttgtccattgaagagcctaccctgaaaataaataatatatttaataacgataagtttttataacaatcataagagta |
5347 |
T |
|
| Q |
303 |
taacatattttaatttaattaataaagtaatgtttaattgtgctattttactttgtaaacaaacccaaatcctccttttccaagtttattagaatctgag |
402 |
Q |
| |
|
|| ||||| |||||||||||||| | |||||||| | | |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
5348 |
tatcatat-----tttaattaataaagcagtgtttaatggcgttattttactttgtaaacagccccaaatccgccttttccaagtttatcagaatctgag |
5442 |
T |
|
| Q |
403 |
aaatcatttgtagcaatacgcatggtgttgaagtcgaattgcagttgctcgggtagtaatattaattttgtc |
474 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
5443 |
aaatcatttgtagcaatacgtatggtgttgaagtctaattgcagttgctc-ggtagtaatatcaattatgtc |
5513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 27369132 - 27369325
Alignment:
| Q |
30 |
aaacctaccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttact |
129 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||| || |||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| || ||| |
|
|
| T |
27369132 |
aaacttaccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaact |
27369231 |
T |
|
| Q |
130 |
aaatttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
223 |
Q |
| |
|
| |||||| ||||||||||| || ||||||| ||||||||| |||||||| | ||||||||| | ||||| |||| |||||||| ||||||| |
|
|
| T |
27369232 |
agatttcgatgttgaagtttggctactaaaagtacttcatttttaaactcaacatctccttggtcagaatttgttgacaaccttttcacagcaa |
27369325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 255
Target Start/End: Original strand, 28829285 - 28829505
Alignment:
| Q |
35 |
taccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatt |
134 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||| ||||||| ||||| | ||||| ||||||||| ||||| | ||||| || | ||| |||||||| |
|
|
| T |
28829285 |
taccaaatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctctcccttcaacagtaaaaccaaggagtctaactaaatt |
28829384 |
T |
|
| Q |
135 |
tcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaacctcttgcccg |
234 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||| |||||||| |||||||||||||| || ||||| || ||||||||||| || |||| | |||| || |
|
|
| T |
28829385 |
tcggtgttgaagtttggccaccaaacgtacttcgttcttaaattctagatctccttgaccagaatttatggataaccttttcaccgcaatcacttgtcca |
28829484 |
T |
|
| Q |
235 |
ttggagaacctaccctgaaaa |
255 |
Q |
| |
|
|| |||| |||||||||||| |
|
|
| T |
28829485 |
ttagagagtctaccctgaaaa |
28829505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 35 - 255
Target Start/End: Original strand, 28860321 - 28860541
Alignment:
| Q |
35 |
taccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatt |
134 |
Q |
| |
|
||||||| || ||||| ||||||||||| || ||| ||| ||||| | ||||||||||||||| ||||| | ||||| |||| ||| |||||||| |
|
|
| T |
28860321 |
taccaaatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaactaaatt |
28860420 |
T |
|
| Q |
135 |
tcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaacctcttgcccg |
234 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||||||||||| ||||||||| || ||||| || || |||||||| ||||| | | |||| || |
|
|
| T |
28860421 |
ccggtgttgaagtttggccattaaaagcacttcattcttaaactctctatctccttggccagaattaatggacaaccttttaacagcgatcgcttgtcca |
28860520 |
T |
|
| Q |
235 |
ttggagaacctaccctgaaaa |
255 |
Q |
| |
|
|| |||| ||||||||||||| |
|
|
| T |
28860521 |
ttagagagcctaccctgaaaa |
28860541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 28854962 - 28855150
Alignment:
| Q |
35 |
taccaaaaataaagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatt |
134 |
Q |
| |
|
||||||| || ||||| ||||||||||| || ||||||| ||||| | |||||||||||||| ||||| | ||||| ||||| || |||||||| |
|
|
| T |
28854962 |
taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctctcccttcgatagtaaaaccaagtaacctaactaaatt |
28855061 |
T |
|
| Q |
135 |
tcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
223 |
Q |
| |
|
| | |||||||||||||||| || | || |||||||||||| || ||||||||||| || |||||||| || ||||||||||| |||| |
|
|
| T |
28855062 |
ttgatgttgaagtttagccatcaagattaattcattcttaaattccagatctccttggccagaattcatggacaaccttttgacggcaa |
28855150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 255
Target Start/End: Original strand, 28874902 - 28875111
Alignment:
| Q |
46 |
aagtaatcaagacttttcttatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaa |
145 |
Q |
| |
|
||||| || |||||||| || ||| ||| ||||| | ||||||||||||||| ||||| | ||||| |||| ||| || ||||| |||||||||| |
|
|
| T |
28874902 |
aagtagtctagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaaccaaattccggtgttgaa |
28875001 |
T |
|
| Q |
146 |
gtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaacctcttgcccgttggagaacct |
245 |
Q |
| |
|
|||| |||| ||||| |||||||||||||| |||| ||||||||| || |||||||| || |||||||| ||||| | | ||| || || |||| ||| |
|
|
| T |
28875002 |
gtttggccattaaaagcacttcattcttaaattctatatctccttggccagaattcatggacaaccttttaacagcgatcgtttgtccattagagagcct |
28875101 |
T |
|
| Q |
246 |
accctgaaaa |
255 |
Q |
| |
|
|||||||||| |
|
|
| T |
28875102 |
accctgaaaa |
28875111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 28860681 - 28860732
Alignment:
| Q |
367 |
ccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagcaa |
418 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28860681 |
ccaaatccgccttccccaagtttattagaatctgagaagtcatttgtagcaa |
28860732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 28829775 - 28829826
Alignment:
| Q |
367 |
ccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagcaa |
418 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28829775 |
ccaaatccaccttgcccaagtttattagaatcacagaaatcatttgtagcaa |
28829826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 28855475 - 28855526
Alignment:
| Q |
367 |
ccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagcaa |
418 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
28855475 |
ccaaatccgccttcgccaagtttattagaatcagagaagtcatttgtagcaa |
28855526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 416
Target Start/End: Original strand, 28875244 - 28875293
Alignment:
| Q |
367 |
ccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagc |
416 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
28875244 |
ccaaatccaccttccccaagtttattagaatcagagaagtcatttgtagc |
28875293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 27369444 - 27369504
Alignment:
| Q |
358 |
taaacaaacccaaatcctccttttccaagtttattagaatctgagaaatcatttgtagcaa |
418 |
Q |
| |
|
||||||| |||||||| |||| ||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
27369444 |
taaacaattccaaatccaccttgtccaagtttattagaattagagaaatcactcgtagcaa |
27369504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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