View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282-Insertion-22 (Length: 455)

Name: NF3282-Insertion-22
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282-Insertion-22
NF3282-Insertion-22
[»] chr5 (2 HSPs)
chr5 (8-455)||(36650362-36650809)
chr5 (12-337)||(36642879-36643204)


Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 8 - 455
Target Start/End: Original strand, 36650362 - 36650809
Alignment:
Q  8 ctgcggcctcaaatggctgtacaccccatctcgtatctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaaca 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36650362 ctgcggcctcaaacggctgtacaccccatctcgtatctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaaca 36650461  T
Q  108 cccctgaatcctttccattcgtgcagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcgaaaaaggggtcagttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36650462 cccctgaatcctttccattcgtgcagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcaaaaaaggggtcagttc 36650561  T
Q  208 tcacacttccactaggcactccaaaaataccaaacgcagccagatgctcaacaacattaaacatgctcatcaacatcatctgtccgagctgaagatcagc 307  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  36650562 tcacacttccactaggcactccaagaataccaaacgcagccagatgctcaacaacattaaacacgctcatcaacatcatctgtccaagctgaagatcagc 36650661  T
Q  308 aaccaaggatttgctactagcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36650662 aaccaaggatttgctactagcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgag 36650761  T
Q  408 taactcggtgtaaaatccataatgaatctattttctccagtgagctcg 455  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  36650762 taactcggtgtaaaatccataatgaaactattttctccagtgagctcg 36650809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 12 - 337
Target Start/End: Complemental strand, 36643204 - 36642879
Alignment:
Q  12 ggcctcaaatggctgtacaccccatctcgtatctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaacacccc 111  Q
    ||||||||| ||||| | ||||| ||||||||||||||||||||||| ||| | |||||| | |||||||||||||||| |||||||||||| |||||||    
T  36643204 ggcctcaaacggctgcataccccttctcgtatctcacctgccaaggcaacatcaacatttctcagattacccatcatagcaaggaaaaagggtacacccc 36643105  T
Q  112 tgaatcctttccattcgtgcagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcgaaaaaggggtcagttctcac 211  Q
     |||||||||||||| |||||||| | |||||| ||  ||  |||| | ||| |||||  | || |||| |||||||| |||| |||| |||||| ||||    
T  36643104 ggaatcctttccatttgtgcagaagactattattaccgtcttcttcgctcctgagcccccaattgcttaaattactgttgaaatagggatcagttttcac 36643005  T
Q  212 acttccactaggcactccaaaaataccaaacgcagccagatgctcaacaacattaaacatgctcatcaacatcatctgtccgagctgaagatcagcaacc 311  Q
    | |||||||||| |  || ||||| || || ||| |||||| ||| || |||||||||| ||||||||||||||||||| ||||||||||||| | ||||    
T  36643004 atttccactaggtaagccgaaaatgccgaaggcacccagattctcgacgacattaaacacgctcatcaacatcatctgtacgagctgaagatcggaaacc 36642905  T
Q  312 aaggatttgctactagcatggtaacc 337  Q
    ||| |||||||| |||||| ||||||    
T  36642904 aagcatttgctagtagcatagtaacc 36642879  T

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