View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-25 (Length: 228)
Name: NF3282-Insertion-25
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-25 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 14180464 - 14180244
Alignment:
| Q |
8 |
atatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtattaaaaataatgtgtcaataatttgtg |
107 |
Q |
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| T |
14180464 |
atatttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtattgaaaataatgtgtcaataatttgtg |
14180365 |
T |
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| Q |
108 |
ttgaatgataatcacgaaaattaaaagagataggagtaatattgattaaaattaacaagaagtactctgatctaattacatagaaaattaatacacccaa |
207 |
Q |
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| T |
14180364 |
ttgaatgataatcacgaaaattaaaagagataggaataatattgattaaaattaacaagaagtactctgatctaattacatagaaaattaatacacccaa |
14180265 |
T |
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| Q |
208 |
tccctatgtttcattgatata |
228 |
Q |
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| T |
14180264 |
tccctatgttttattgatata |
14180244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 95455 - 95571
Alignment:
| Q |
12 |
ttagtttaattatatatgtcaccttcctttggagattctccatttgttgttgcatgagctcattctgtattaaaaataatgtgtcaataatttgtgttga |
111 |
Q |
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| T |
95455 |
ttagtttaattatatatgtcaccttcctgatcatattatcaatttgctgctgcatgagctcattctgcattaaaaataatgtgtcaataatttgtgttga |
95554 |
T |
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| Q |
112 |
atgataatcacgaaaat |
128 |
Q |
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| T |
95555 |
aggatagtcatgaaaat |
95571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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