View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-29 (Length: 298)
Name: NF3282-Insertion-29
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 8956812 - 8957102
Alignment:
| Q |
8 |
aatttatcaccaaaagaacatgaatccctcaaaactccaccaggctacatttcatccataaaagattcacacatgaaactcgacacaacacattcacctc |
107 |
Q |
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| T |
8956812 |
aatttatcaccaaaagaacatgaatccctcaaaacttcaccaggctacatttcatccataaaagattcacacatgaaactcgacacaacacattcacctc |
8956911 |
T |
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| Q |
108 |
agttcctcggcctcaatcccaacaaaggcgcttggcacgattcgaactttggcaacgacgtaattgttggtttaatcgacaccggaatttggcccgaaag |
207 |
Q |
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| T |
8956912 |
agttcctcggcctcaatcccaacaaaggcgcttggcatgattcgaactttggcaacgacgtaattgttggtttaatcgacaccggaatttggcccgaaag |
8957011 |
T |
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| Q |
208 |
cgaaagctttaaagataatttaatgtccgaaattccttcaaaatggaatggacagtgtgaaaatagcattcttttcaattcatctctttgc |
298 |
Q |
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| T |
8957012 |
cgaaagctttaaagataatttaatgtccgaaattccttcaaaatggaatggacagtgtgaaaatagcattcttttcaattcatctctttgc |
8957102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 34964026 - 34963739
Alignment:
| Q |
11 |
ttatcaccaaaagaacatgaatccctcaaaactccaccaggctacatttcatccataaaagattcacacatgaaactcgacacaacacattcacctcagt |
110 |
Q |
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| T |
34964026 |
ttatcaccaaaagaacatgaatccctcaaaaatgcaccaggttacatttcatctataagagatttacacatgaaaatggacacaacacattcacctcaat |
34963927 |
T |
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| Q |
111 |
tcctcggcctcaatcccaacaaaggcgcttggcacgattcgaactttggcaacgacgtaattgttggtttaatcgacaccggaatttggcccgaaagcga |
210 |
Q |
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| T |
34963926 |
tccttggcctcaatcccaacataggcgcttggcatgattcgaagttcggtgaagacataattgtaggtgtgattgacacaggagtttggccagaaagtga |
34963827 |
T |
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| Q |
211 |
aagctttaaagataatttaatgtccgaaattccttcaaaatggaatggacagtgtgaaaatagcattcttttcaattcatctctttgc |
298 |
Q |
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| T |
34963826 |
gagcttcaaagatgatggaatgactaaaattccttcaaaatggaaaggacaatgtgaaaatagcattcatttcaattcatctctttgc |
34963739 |
T |
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