View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-3 (Length: 1066)
Name: NF3282-Insertion-3
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 710; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 7 - 770
Target Start/End: Complemental strand, 49300318 - 49299555
Alignment:
| Q |
7 |
aataataaagattgatttgcctgtagaagattgaggatgctctcaagtgtagcagttttatcaggaccaacttcataagacctaataacaacagtttgtc |
106 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49300318 |
aataataaagatcgatttgcctgtagaagattgaggatgctctcaagtgtagcagttttatcaggaccaacttcataagacctaataacaacagtttgtc |
49300219 |
T |
|
| Q |
107 |
tataaccaacaccaccttcagcaatgagaccttgacgatgaggatcaaccaattgtttctttgtcggtatgttttggcgcagaccattttcaacaagagt |
206 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49300218 |
tataaccaacaccaccttcaacaatgagaccttgacgatgaggatcaaccaattgtttctttgtcggtatgttttggcgcagaccattttcaacaagagt |
49300119 |
T |
|
| Q |
207 |
tgtaggtgcagcttcagctgtttgactaagagattctactttaatcggagacctataacttccattcattctaatgctgttgttactgttcaattggtca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49300118 |
tgtaggtgcagcttcagctgtttgactaagagattcaactttaatcggagacctataacttccattcattctaatgctgttgttactgttcaattggtca |
49300019 |
T |
|
| Q |
307 |
tgatggttatctttcatagagcaacaccttacaagaaaggaagaagctgaacatgtaaaattagtaacagccattgttctgttccnnnnnnnnnnnnnnc |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
49300018 |
tgatggttatctttcatagagcaacaccttacaagaaaggaagaagctgaacatgtaaaattagtaacagccattgttctgttcctttttttattttttc |
49299919 |
T |
|
| Q |
407 |
actttcactctccaaaggatatggaaggggagtgaggttggaaatgaaacttgttatttatagtttaaagtttggacggaatgaacaaaggaggacttaa |
506 |
Q |
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| T |
49299918 |
actttcactctccaaaggatatggaaggggagtgaggttggaaatgaaacttgttatttatagtttaaagtttggacggaatgaacaaaggaggacttaa |
49299819 |
T |
|
| Q |
507 |
aaagaatgagagacaaagatgtgaaccttgtgatttagctgacaaatcaaagagggattgcatggtttttgatgcttgtggaagtagctgtccaaattga |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49299818 |
aaagaatgagagacaaagatgtgaaccttgtgatttagctgacaaatcaaagagggattgcatggtttttgatgcttgtggaagtagctgtccaaattga |
49299719 |
T |
|
| Q |
607 |
gaaaggaaatcaatgcataaccttgaactgatcgattagctagagtgggacaaaagcaactatttagtttgtgtcagggaaattttgtgttttagtgaaa |
706 |
Q |
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| T |
49299718 |
gaaaggaaatcaatgcataaccttgaactgatcgattagctagagtgggacaaaagcaactatttagtttgtgtcagggaaattttgtgttttagtgaaa |
49299619 |
T |
|
| Q |
707 |
tatagacataaaataggaattctctttgaacactagctgctctactaacttgacatcataaacc |
770 |
Q |
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|
| T |
49299618 |
tatagacataaaataggaattctctttgaacactagctgctctactaacttgacatcataaacc |
49299555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 787 - 889
Target Start/End: Complemental strand, 49299564 - 49299463
Alignment:
| Q |
787 |
atcataaaccttgtcctcttccagcttacattcattatgcttattacgtattgttatggttgattagaaagctgcggagagacatatacattatcatggt |
886 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49299564 |
atcataaaccttgtcctcttccagct-acattcattatgcttattacgtattgttatggttgattagaaagctgcggagagacatatacattatcatggt |
49299466 |
T |
|
| Q |
887 |
tat |
889 |
Q |
| |
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||| |
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|
| T |
49299465 |
tat |
49299463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 948 - 988
Target Start/End: Complemental strand, 49299443 - 49299402
Alignment:
| Q |
948 |
ctccttggttttt-ctaatagtaaaagacacatttcattttt |
988 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
49299443 |
ctccttggttttttctattagtaaaagacacatttcattttt |
49299402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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