View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282-Insertion-30 (Length: 212)

Name: NF3282-Insertion-30
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282-Insertion-30
NF3282-Insertion-30
[»] chr7 (7 HSPs)
chr7 (8-212)||(33778853-33779057)
chr7 (29-162)||(25533364-25533496)
chr7 (33-150)||(3413712-3413831)
chr7 (29-157)||(7354680-7354808)
chr7 (39-157)||(47059297-47059416)
chr7 (66-135)||(22336191-22336260)
chr7 (97-157)||(24282788-24282848)
[»] chr2 (7 HSPs)
chr2 (29-162)||(34513359-34513493)
chr2 (29-162)||(34512988-34513126)
chr2 (29-149)||(34467682-34467806)
chr2 (29-162)||(34464144-34464281)
chr2 (44-126)||(11547851-11547933)
chr2 (43-134)||(43034315-43034405)
chr2 (29-63)||(36422283-36422317)
[»] scaffold2071 (1 HSPs)
scaffold2071 (29-162)||(488-621)
[»] chr5 (6 HSPs)
chr5 (30-154)||(33172724-33172850)
chr5 (31-153)||(22308614-22308737)
chr5 (72-156)||(36898791-36898875)
chr5 (109-163)||(22812269-22812323)
chr5 (31-63)||(223401-223433)
chr5 (123-163)||(1273282-1273322)
[»] chr8 (4 HSPs)
chr8 (29-162)||(8571421-8571556)
chr8 (29-162)||(22551182-22551316)
chr8 (30-141)||(14840727-14840838)
chr8 (29-157)||(42870991-42871119)
[»] chr3 (7 HSPs)
chr3 (29-162)||(53420493-53420628)
chr3 (29-85)||(42685052-42685108)
chr3 (37-156)||(44602857-44602976)
chr3 (41-159)||(34819094-34819212)
chr3 (30-63)||(40892333-40892366)
chr3 (109-142)||(42685112-42685145)
chr3 (32-132)||(28909444-28909544)
[»] chr1 (4 HSPs)
chr1 (31-162)||(46467324-46467454)
chr1 (40-162)||(23091529-23091652)
chr1 (82-162)||(16123520-16123605)
chr1 (37-134)||(27556452-27556549)
[»] chr6 (2 HSPs)
chr6 (29-154)||(32505843-32505971)
chr6 (33-162)||(18558591-18558721)
[»] chr4 (5 HSPs)
chr4 (29-130)||(1794589-1794690)
chr4 (37-156)||(45535228-45535347)
chr4 (29-75)||(8682702-8682748)
chr4 (32-157)||(1519989-1520114)
chr4 (31-63)||(38555185-38555217)
[»] scaffold0031 (2 HSPs)
scaffold0031 (29-130)||(125069-125171)
scaffold0031 (43-126)||(124157-124240)
[»] scaffold0019 (1 HSPs)
scaffold0019 (33-158)||(62942-63067)
[»] scaffold0128 (1 HSPs)
scaffold0128 (114-162)||(23068-23117)
[»] scaffold0013 (1 HSPs)
scaffold0013 (39-132)||(32758-32853)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 33779057 - 33778853
Alignment:
Q  8 ggaccaaccttaagagtgatcccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaa 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  33779057 ggaccaaccttaagagtggtcccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccactagattatacgtgtctattgtaa 33778958  T
Q  108 cttactgtgtaccaacaacaactaattttttctttctttcttcatcttctaccttcaactaataagtgtattaatatgttggttcaatgtggttttgcag 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33778957 cttactgtgtaccaacaacaattaattttttctttctttcttcatcttctaccttcaactaataagtgtattaatatgttggttcaatgtggttttgcag 33778858  T
Q  208 cttct 212  Q
    |||||    
T  33778857 cttct 33778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 25533364 - 25533496
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaa 128  Q
    ||||||||||| ||| ||||||||| ||||||| || |||||||||| ||||||||| |||||||| |||||||| |||||||| ||||||||||||| |    
T  25533364 ccttattaaatcttt-aatttaaaccgtttgatatattttttaaaaagatgaccatttgattatgcatgtctattataacttaccgtgtaccaacaacta 25533462  T
Q  129 ctaattttttctttctttcttcatcttctacctt 162  Q
     |  ||||  ||||||||||||||||||||||||    
T  25533463 atttttttccctttctttcttcatcttctacctt 25533496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 3413712 - 3413831
Alignment:
Q  33 attaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaa 132  Q
    ||||| ||||| ||||| ||| |||||||||  ||  |||||| || | ||||  ||||||||||||| ||||||||||| |||||||||||||| ||||    
T  3413712 attaattttttaaattttaaccgtttgatctgtttgctaaaaagatcatcattgaattatgcgtgtctgttgtaacttacggtgtaccaacaacacctaa 3413811  T
Q  133 --ttttttctttctttcttc 150  Q
      ||||||||||||||||||    
T  3413812 ttttttttctttctttcttc 3413831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 7354680 - 7354808
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaa 128  Q
    |||||||||||| |||| ||||||| | |||||||  ||||  | ||||  |||||||||| || | |||||||| || || |  ||| |||| || |||    
T  7354680 ccttattaaattgtttagtttaaaccgattgatctttttttagacaatacaaccattagatcatacttgtctattatatctaatcgtgcaccaccatcaa 7354779  T
Q  129 ctaattttttctttctttcttcatcttct 157  Q
    |||||||||||  ||||||||||||||||    
T  7354780 ctaattttttccctctttcttcatcttct 7354808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 47059297 - 47059416
Alignment:
Q  39 ttttttaatttaaactgtttgatctactt-tttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaattttt 137  Q
    ||||||||||||||| |||||||||  || |||||||  ||||||||| ||||| || ||| |||| || ||||| |||   ||| |||| || ||| ||    
T  47059297 ttttttaatttaaaccgtttgatctgtttatttaaaaggatgaccattggattacgcatgtgtattttatcttacagtgagtcaataacacctgattatt 47059396  T
Q  138 tctttctttcttcatcttct 157  Q
    ||| ||||||||||||||||    
T  47059397 tctctctttcttcatcttct 47059416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 22336191 - 22336260
Alignment:
Q  66 tttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaattt 135  Q
    |||||||||| || ||||||||||| |||  ||||||| || ||||||||  |||||||||| |||||||    
T  22336191 tttttaaaaagataaccattagattgtgcaagtctattttatcttactgtaaaccaacaacacctaattt 22336260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 24282848 - 24282788
Alignment:
Q  97 gtctattgtaacttactgtgtaccaacaacaactaattttttctttctttcttcatcttct 157  Q
    ||||||| |||||||| ||| |||| | ||||||||||| || || |||||||||||||||    
T  24282848 gtctattttaacttacagtggaccacctacaactaatttatttttgctttcttcatcttct 24282788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 34513493 - 34513359
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaa 128  Q
    ||||||||| ||||||||||||||| |||||||||  |||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||    
T  34513493 ccttattaatttttttaatttaaaccgtttgatctgttttttaaaaagatgatcattggattatgcgtgtctattgtaacttacggtgtaccaacaacaa 34513394  T
Q  129 ctaatt-ttttctttctttcttcatcttctacctt 162  Q
    |||||| ||||||||||||||||||||||||||||    
T  34513393 ctaatttttttctttctttcttcatcttctacctt 34513359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 34512988 - 34513126
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctacttttt----aaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaaca 124  Q
    |||||||||||||||||||||||||| |||||| |  |||||    ||||| |||||  ||  ||| ||| ||||||||| ||||||| |||||||||||    
T  34512988 ccttattaaattttttaatttaaactatttgatttgtttttttaaaaaaaaaatgacatttgaattgtgcatgtctattgcaacttacggtgtaccaaca 34513087  T
Q  125 acaactaat-tttttctttctttcttcatcttctacctt 162  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  34513088 acaactaatatttttctttctttcttcatcttctacctt 34513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 34467682 - 34467806
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctacttttt--aaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaac 126  Q
    ||||||||| ||||||||||||||||||||||| |  |||||  ||||  ||||||| | ||||||  ||||||||||||||||||  ||||||||||||    
T  34467682 ccttattaagttttttaatttaaactgtttgatattttttttttaaaatgatgaccactggattatatgtgtctattgtaacttacgatgtaccaacaac 34467781  T
Q  127 aactaa--ttttttctttctttctt 149  Q
    ||||||  |||||||||||||||||    
T  34467782 aactaaatttttttctttctttctt 34467806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 34464144 - 34464281
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaat-atgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaaca 127  Q
    |||||||| ||||||||||||||||||||||||||  |||||  |||| || | || ||||||||  ||||| |||||||||||| ||||||||||| ||    
T  34464144 ccttattagattttttaatttaaactgtttgatctgatttttttaaatgattatcactagattatatgtgtc-attgtaacttacagtgtaccaacatca 34464242  T
Q  128 actaatttt----ttctttctttcttcatcttctacctt 162  Q
    |||||||||    |||||||||| |||||||||||||||    
T  34464243 actaattttttttttctttctttattcatcttctacctt 34464281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 11547851 - 11547933
Alignment:
Q  44 taatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaac 126  Q
    |||||||||| |||||||||  |||  ||||| |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  11547851 taatttaaaccgtttgatctgttttccaaaaagatgaccatgagattacgtgtgtctattgtaacttacagtgtaccaacaac 11547933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 43034405 - 43034315
Alignment:
Q  43 ttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaatt 134  Q
    ||||||||||| ||||||| || ||||| |||| ||||||||| |||||||| |||||||| || ||||| || |  |||||||||||||||    
T  43034405 ttaatttaaaccgtttgat-taattttttaaaagatgaccattggattatgcatgtctattttatcttacggtatgtcaacaacaactaatt 43034315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 36422283 - 36422317
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatct 63  Q
    |||||||||||||||||||||||||| ||||||||    
T  36422283 ccttattaaattttttaatttaaactctttgatct 36422317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 621 - 488
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaa 128  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||| ||||||||| |||||||||| ||||| ||||||||| | |||||||||||||    
T  621 ccttattaaattttttaatttaaaccgtttgatctgttttttaaaaagatgaccattggattatgcgt-tctatcgtaacttacggagtaccaacaacaa 523  T
Q  129 ctaa-ttttttctttctttcttcatcttctacctt 162  Q
    |||| |||||||||| |||||||||||||||||||    
T  522 ctaatttttttctttatttcttcatcttctacctt 488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 33172724 - 33172850
Alignment:
Q  30 cttattaaattttttaa-tttaaactgtttgatctacttttta-aaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaaca 127  Q
    ||||||||||||||||| ||||||| |||||||||| |||||  |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  33172724 cttattaaattttttaagtttaaaccgtttgatctattttttttaaaagatgaccattagattatgcgtgtctattttaacttacggtgtaccaacaaca 33172823  T
Q  128 actaattttttctttctttcttcatct 154  Q
    |||||||||||||||||| ||||||||    
T  33172824 actaattttttctttcttacttcatct 33172850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 22308737 - 22308614
Alignment:
Q  31 ttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaact 130  Q
    ||||||||||||||||| |||||  ||||||||  |||||||||| ||||||||| |||||||| |||||||||| |||||| |||||||||||||| ||    
T  22308737 ttattaaattttttaatgtaaaccatttgatctgttttttaaaaagatgaccattggattatgcatgtctattgttacttacggtgtaccaacaacacct 22308638  T
Q  131 aa-ttttttctttctttcttcatc 153  Q
    || |||||||||||||||||||||    
T  22308637 aatttttttctttctttcttcatc 22308614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 36898875 - 36898791
Alignment:
Q  72 aaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaattttttctttctttcttcatcttc 156  Q
    |||| ||||||||| ||||| || |||||||| || |||||  ||||||| ||||| |||||||||| ||  |||||||||||||    
T  36898875 aaaagatgaccattggattacgcatgtctattttatcttacgatgtaccaccaacacctaatttttttttcttttcttcatcttc 36898791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 22812323 - 22812269
Alignment:
Q  109 ttactgtgtaccaacaacaactaattttttctttctttcttcatcttctaccttc 163  Q
    |||| |||||||  ||||| ||||||||||||||||| ||||||||||| |||||    
T  22812323 ttacagtgtaccgccaacacctaattttttctttcttccttcatcttcttccttc 22812269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 223401 - 223433
Alignment:
Q  31 ttattaaattttttaatttaaactgtttgatct 63  Q
    ||||||||||||||||||||||| |||||||||    
T  223401 ttattaaattttttaatttaaaccgtttgatct 223433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 1273282 - 1273322
Alignment:
Q  123 caacaactaattttttctttctttcttcatcttctaccttc 163  Q
    ||||| ||||||||| ||||||||||||||||||| |||||    
T  1273282 caacacctaatttttcctttctttcttcatcttcttccttc 1273322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 8571556 - 8571421
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaata-tgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaaca 127  Q
    |||||||||| ||||||||||||||||||||||||  || ||||||| | |||||||| |||||| |||||||||||||||||||  |||||||||||||    
T  8571556 ccttattaaactttttaatttaaactgtttgatctgtttcttaaaaagaatgaccattggattatacgtgtctattgtaacttacgatgtaccaacaaca 8571457  T
Q  128 actaatt-ttttctttctttcttcatcttctacctt 162  Q
    ||||||| |||| |||||||||||||||||||||||    
T  8571456 actaattcttttatttctttcttcatcttctacctt 8571421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 22551182 - 22551316
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaa 128  Q
    |||||||||||||| |||||||||| |||||||||  |||||||||| ||||| |||  ||| ||| ||||||||||||||||  ||  |||||||||||    
T  22551182 ccttattaaattttgtaatttaaaccgtttgatctgttttttaaaaagatgacaattgaattttgcatgtctattgtaacttaaagttcaccaacaacaa 22551281  T
Q  129 ctaatttt-ttctttctttcttcatcttctacctt 162  Q
    |||||||| ||||||||||||||||||||||||||    
T  22551282 ctaattttgttctttctttcttcatcttctacctt 22551316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 14840838 - 14840727
Alignment:
Q  30 cttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaac 129  Q
    |||||||||||||||||||||||| ||||||| |  ||| |||||| |||||||||  ||||||||||||||||||||||||| ||| | ||||||||||    
T  14840838 cttattaaattttttaatttaaaccgtttgatatgttttctaaaaagatgaccattgaattatgcgtgtctattgtaacttacggtgcatcaacaacaac 14840739  T
Q  130 taattttttctt 141  Q
    ||||| ||||||    
T  14840738 taattctttctt 14840727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 42870991 - 42871119
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaa 128  Q
    |||||||||||||| |||||||||| |||||||||   ||||||||  |||||||||  |||| || ||| |||| || ||||| | |   ||||||||     
T  42870991 ccttattaaattttgtaatttaaaccgtttgatctgtgttttaaaaggatgaccattgaattacgcatgtgtattttatcttaccgcgagtcaacaacac 42871090  T
Q  129 ctaattttttctttctttcttcatcttct 157  Q
    |||||| |||||  |||||||||||||||    
T  42871091 ctaattatttctccctttcttcatcttct 42871119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 53420493 - 53420628
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaata-tgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaaca 127  Q
    |||||||||| ||||||||||||||||||||||||  || ||||||| | ||||||||| ||||| |||||||||||||||||||  |||||||||||||    
T  53420493 ccttattaaactttttaatttaaactgtttgatctgtttcttaaaaaaaatgaccattaaattatacgtgtctattgtaacttacgatgtaccaacaaca 53420592  T
Q  128 actaatt-ttttctttctttcttcatcttctacctt 162  Q
    ||||||| |||| |||||||||||||||||||||||    
T  53420593 actaattcttttatttctttcttcatcttctacctt 53420628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 42685052 - 42685108
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccatt 85  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  42685052 ccttattaaattttttaatttaaaccgtttgatctgttttttaaaaagatgaccatt 42685108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 44602976 - 44602857
Alignment:
Q  37 aattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaatttt 136  Q
    ||||||||||||||||| |||||||||  | |||||||  || || ||| ||||| ||||||||||| || ||||| |||   |||||||||||||||      
T  44602976 aattttttaatttaaaccgtttgatcttttatttaaaaggataactattggattacgcgtgtctattttatcttacagtgagtcaacaacaactaattaa 44602877  T
Q  137 ttctttctttcttcatcttc 156  Q
    |||| || ||||||||||||    
T  44602876 ttctctccttcttcatcttc 44602857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 34819212 - 34819094
Alignment:
Q  41 ttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaattttttct 140  Q
    ||||||||||||||||||| | |  ||| |||||| |  |||||| ||||| ||  ||||||| || ||||  |||||||| ||||| |||||||||| |    
T  34819212 ttttaatttaaactgtttgttttt-tttataaaaaaagaaccattggattaggcaagtctattttatcttatggtgtaccaccaacacctaatttttttt 34819114  T
Q  141 ttcttt-cttcatcttctac 159  Q
    |||||| |||||||||||||    
T  34819113 ttcttttcttcatcttctac 34819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 40892333 - 40892366
Alignment:
Q  30 cttattaaattttttaatttaaactgtttgatct 63  Q
    |||||||||||||||||||| |||||||||||||    
T  40892333 cttattaaattttttaattttaactgtttgatct 40892366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 42685112 - 42685145
Alignment:
Q  109 ttactgtgtaccaacaacaactaattttttcttt 142  Q
    |||| |||||||||||||||||||||||||||||    
T  42685112 ttacggtgtaccaacaacaactaattttttcttt 42685145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 28909544 - 28909444
Alignment:
Q  32 tattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaacta 131  Q
    |||||| ||||||||||||||||| |||||||  ||| | |||| | |||  |||||| |||| |||||| |||| ||||| ||| || ||||||| |||    
T  28909544 tattaatttttttaatttaaactggttgatcttttttattaaaagaggacggttagatcatgcatgtctactgtatcttacggtgaactaacaacatcta 28909445  T
Q  132 a 132  Q
    |    
T  28909444 a 28909444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 46467324 - 46467454
Alignment:
Q  31 ttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaact 130  Q
    |||||||||||| |||||||||| ||||||| || ||| |||||| |||||||||  ||||| ||||||||||||||||||| ||| |||||||||||||    
T  46467324 ttattaaatttt-taatttaaaccgtttgatatattttctaaaaagatgaccattgaattatacgtgtctattgtaacttacggtgcaccaacaacaact 46467422  T
Q  131 aattttttctttctttcttcatcttctacctt 162  Q
    |||| |||||||||||||||||||||||||||    
T  46467423 aattctttctttctttcttcatcttctacctt 46467454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 23091529 - 23091652
Alignment:
Q  40 tttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaatt-tttt 138  Q
    |||||| |||||||||||||||||| |||| ||||| |||||||||  ||||| |||||||||||||||||||  |||||||||||||||||||| ||||    
T  23091529 tttttattttaaactgtttgatctatttttaaaaaaaatgaccattgaattatacgtgtctattgtaacttacgatgtaccaacaacaactaattctttt 23091628  T
Q  139 ctttctttcttcatcttctacctt 162  Q
     |||||||||||||||||||||||    
T  23091629 atttctttcttcatcttctacctt 23091652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 16123520 - 16123605
Alignment:
Q  82 cattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaatt-----ttttctttctttcttcatcttctacctt 162  Q
    |||| |||| ||||| ||||||||||| |||  |||||||||||||| |||||     |||||||||||||||| |||||||||||    
T  16123520 cattggattctgcgtatctattgtaacgtacgatgtaccaacaacaattaattttctcttttctttctttcttcgtcttctacctt 16123605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 27556452 - 27556549
Alignment:
Q  37 aattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaatt 134  Q
    ||||||||||||||||| |||||||||    |||||||  || || ||| ||||| ||||||||||| || ||||| |||   |||||||||||||||    
T  27556452 aattttttaatttaaacagtttgatctttaatttaaaagaataactattggattaagcgtgtctattttatcttacagtgagtcaacaacaactaatt 27556549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 32505843 - 32505971
Alignment:
Q  29 ccttattaaattttttaa-tttaaactgtttgatctacttttt-aaaaatat-gaccattagattatgcgtgtctattgtaacttactgtgtaccaacaa 125  Q
    |||||||||||||||||| ||||||| |||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  32505843 ccttattaaattttttaagtttaaaccgtttgatctatttttttaaaaagatagaccattagattatgcgtgtctattttaacttacggtgtaccaacaa 32505942  T
Q  126 caactaattttttctttctttcttcatct 154  Q
    |||  ||||||||||||||| ||||||||    
T  32505943 caataaattttttctttcttacttcatct 32505971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 18558591 - 18558721
Alignment:
Q  33 attaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaa 132  Q
    ||||| |||||||||||||||  |||||||||  |||||||||  |||| |||  |||||| || ||||||||||||||| | |||||||||| ||||||    
T  18558591 attaacttttttaatttaaaccatttgatctatattttaaaaaggtgactattgaattatgtgtttctattgtaacttacggcgtaccaacaaaaactaa 18558690  T
Q  133 tt-ttttctttctttcttcatcttctacctt 162  Q
    || ||||||| ||||||||||||||||||||    
T  18558691 ttattttcttcctttcttcatcttctacctt 18558721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 1794589 - 1794690
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaa 128  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||  ||||||||||||||||||||||||| ||||| |||||||||    
T  1794589 ccttattaaattttttaatttaaaccgtttgatcaattttttaaaaagatgaccattgaattatgcgtgtctattgtaacttacggtgtatcaacaacaa 1794688  T
Q  129 ct 130  Q
    ||    
T  1794689 ct 1794690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 45535228 - 45535347
Alignment:
Q  37 aattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaatttt 136  Q
    |||||||||||||||||||||||||||  | |||||||  || || ||| ||||| ||||||||||| || ||||| |||   |||||||||||||||      
T  45535228 aattttttaatttaaactgtttgatcttttatttaaaaggataactattggattacgcgtgtctattttatcttacagtgagtcaacaacaactaattaa 45535327  T
Q  137 ttctttctttcttcatcttc 156  Q
    |||| || || |||||||||    
T  45535328 ttctctcctttttcatcttc 45535347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 8682748 - 8682702
Alignment:
Q  29 ccttattaaattttttaatttaaactgtttgatctactttttaaaaa 75  Q
    ||||||||||||||||||||||||  |||||||||| ||||| ||||    
T  8682748 ccttattaaattttttaatttaaatcgtttgatctattttttgaaaa 8682702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 1519989 - 1520114
Alignment:
Q  32 tattaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaacta 131  Q
    |||||| | ||||||||||||| |||||||    |||||||||  ||||||||||||||| |   || |||| || ||||| ||| | |||||||| |||    
T  1519989 tattaattattttaatttaaaccgtttgattatatttttaaaaggatgaccattagattacgtaagtgtattttatcttacggtgaatcaacaacaccta 1520088  T
Q  132 attttttctttctttcttcatcttct 157  Q
    ||| | |||  |||||||||||||||    
T  1520089 attatgtctccctttcttcatcttct 1520114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 38555217 - 38555185
Alignment:
Q  31 ttattaaattttttaatttaaactgtttgatct 63  Q
    ||||||||||||||||||||||| |||||||||    
T  38555217 ttattaaattttttaatttaaaccgtttgatct 38555185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 125171 - 125069
Alignment:
Q  29 ccttattaaatttttt-aatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaaca 127  Q
    |||||||||||||||| |||||||||  |||||||   |||||||||| ||||||||| |||||||||||||||||||||||||| |||||  |||||||    
T  125171 ccttattaaatttttttaatttaaaccctttgatcagttttttaaaaagatgaccattggattatgcgtgtctattgtaacttacagtgtataaacaaca 125072  T
Q  128 act 130  Q
    |||    
T  125071 act 125069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 124157 - 124240
Alignment:
Q  43 ttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaac 126  Q
    ||||||||||  |||||||||| |||||||||| || |||||  |||||||| ||||||||||||||||| |||||||||||||    
T  124157 ttaatttaaatcgtttgatctattttttaaaaagataaccataggattatgcatgtctattgtaacttacagtgtaccaacaac 124240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 63067 - 62942
Alignment:
Q  33 attaaattttttaatttaaactgtttgatctactttttaaaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaa 132  Q
    ||||| ||||| ||||| ||| |||||||||  ||  |||||| || || |||  ||||||||||| | ||||||||||| |||||||||||||| ||||    
T  63067 attaattttttaaattttaaccgtttgatctgtttgctaaaaagatcacaattgaattatgcgtgtttgttgtaacttacggtgtaccaacaacacctaa 62968  T
Q  133 ttttttctttctttcttcatcttcta 158  Q
    |||||| |||||||||| ||||||||    
T  62967 ttttttttttctttctttatcttcta 62942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 23117 - 23068
Alignment:
Q  114 gtgtaccaacaacaactaatttttt-ctttctttcttcatcttctacctt 162  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  23117 gtgtaccaacaacatctaatttttttctttctttcttcatcttcaacctt 23068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 32758 - 32853
Alignment:
Q  39 ttttttaatttaaactgtttgatctacttttta--aaaatatgaccattagattatgcgtgtctattgtaacttactgtgtaccaacaacaactaa 132  Q
    ||||||||||||||| |||||||||  ||||||  |||| | ||||||||||| |||| |||||| |||| ||||| ||  |||||||||| ||||    
T  32758 ttttttaatttaaaccgtttgatcttttttttattaaaagaggaccattagatcatgcatgtctactgtatcttacggtaaaccaacaacatctaa 32853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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