View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-4 (Length: 1020)
Name: NF3282-Insertion-4
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 594 - 1020
Target Start/End: Original strand, 19067708 - 19068132
Alignment:
| Q |
594 |
aaaatcggtatgtaacttcattttttaattagatcgaaatttgttggtagtataattattagtatatcaatacatatattacaaacccaagcgtattgac |
693 |
Q |
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| T |
19067708 |
aaaatcggtatgtaacttcattttttaattagatcaaaatttgttggtagtataattattagtatatcaatacatatattacaaacccaagcgtattgac |
19067807 |
T |
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| Q |
694 |
tatgtataaccgccacttaccaaatacattggtagattgtgtacccggtaactattgatcacatgcatgaatcaaattgtcatcccaaattaacgtatta |
793 |
Q |
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| T |
19067808 |
tatgtatacccgccatttaccaagtactttggcagattgtgtacccggtaactattgatcagatgcatgaatcaaattgtcatcccaaattaacgtatta |
19067907 |
T |
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| Q |
794 |
aaatagaaactccaggaactattaaatgtggaagaagatactcgtccaatcttcccgtgcttaggtacattgagtaggccgtcattgggatttcattgac |
893 |
Q |
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| T |
19067908 |
taatagaaacttcaggaactattaaatgtggaagaagatactcgtccaatcttcccgtgcttaggtacattgagtaggccgccatt-ggatttcatcgac |
19068006 |
T |
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| Q |
894 |
aaagaactatgagg-cagaattcctaaacaccttatttccctggttgctcaaagtctgcatggtgttttcgagctcatgcgtttcacaacaccgatatgc |
992 |
Q |
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| T |
19068007 |
aaagaactatgaggccagaattcctaaacacctta-ttccctggttgctcaaagtctgcat-gtgtttcgaagctcatgcgtttcaaaacacc-atatgc |
19068103 |
T |
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| Q |
993 |
cgaagtcttc-agactttgaaactattcg |
1020 |
Q |
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| T |
19068104 |
cgagttgttcaagaccttgaaactattcg |
19068132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 333 - 460
Target Start/End: Original strand, 19067574 - 19067701
Alignment:
| Q |
333 |
catggtgtgttattgggatcttgaatgacattctgacggtggaagnnnnnnnggaagatcagggaggcaaccttatttaattcaaagctttcgacaagca |
432 |
Q |
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| T |
19067574 |
catggtgtgttattggggacttgaatgacattcagacagtggaagaaaaaaaggaagatcagggaggcaaccttctttatttcaaagctttcgacaagca |
19067673 |
T |
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| Q |
433 |
gttcttgatgctggtcttattgatattc |
460 |
Q |
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| T |
19067674 |
gttcttgatgctggtcttattaatattc |
19067701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 412 - 495
Target Start/End: Original strand, 32953955 - 32954038
Alignment:
| Q |
412 |
attcaaagctttcgacaagcagttcttgatgctggtcttattgatattccaatggaggggtattctttcacttggttcaaaagt |
495 |
Q |
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| T |
32953955 |
attcaaggctttcgacaagctgttttggatgctggacttgctgatattcctatggatggttatgctttcacttggttcaaaagt |
32954038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 599 - 688
Target Start/End: Complemental strand, 48500039 - 48499947
Alignment:
| Q |
599 |
cggtatgtaacttcatttttt-aattagatcgaaatttgttggtagtataattattagtatatcaata--catatattacaaacccaagcgta |
688 |
Q |
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| T |
48500039 |
cggtatgtaatttcatttttttaactggaccaaaatttgatgatagtataattattagtatatcaatatgtatatattacgaacccaagcgta |
48499947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 16322044 - 16322105
Alignment:
| Q |
439 |
gatgctggtcttattgatattccaatggaggggtattctttcacttggttcaaaagtttagg |
500 |
Q |
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| T |
16322044 |
gatgctggtcttattgatatgcatatggaggggtacccattcacgtggttcaaaagtttagg |
16322105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 11213143 - 11213085
Alignment:
| Q |
8 |
ttttaatcatactctcgaattctattccactattccatatcacattgaatgttttggtt |
66 |
Q |
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| T |
11213143 |
ttttgatcgtactcccgaattctattccacaattccatatcacgttgaatatttgggtt |
11213085 |
T |
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