View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282-Insertion-5 (Length: 1010)
Name: NF3282-Insertion-5
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 279 - 953
Target Start/End: Original strand, 37487724 - 37488402
Alignment:
| Q |
279 |
cattttgctttcggtttttcgtttggctttcaatttcatgttttgcttgtgatacaatagtaataataataataatcttttaatgaattttattactgga |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||| |
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| T |
37487724 |
cattttgctttcggtttttcgtttggctttcaatttcatgtttcacttgtgatacaata---ataataataataatcttttaattgattttgttactgga |
37487820 |
T |
|
| Q |
379 |
cagaattttgatgctatctcccctccgagaattgcaggattagttggttgtatagtaccccttcccatcaacgatgatcttcgccttcaactcactcccc |
478 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
37487821 |
cagaattttgatgctattgcccctccgagaattgcaggattagttggttgtatagtacccattcccatcaatgatgatcttcgccttcaactcactcccc |
37487920 |
T |
|
| Q |
479 |
tctgcgaggctgcgttggtgaaatgcaatactgagaatcaggcaagttcaatgatgattatagcatatttactcattcattgatcaaataattaagtatt |
578 |
Q |
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| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37487921 |
tttgggaggctgcgttggtgaaatgcaatactgagaatcaggcaagttcaatgatgattatagcatatttactcattcattgatcaaataattaagtatt |
37488020 |
T |
|
| Q |
579 |
cttcttaattattagggtgcaaaatttgtgttagctgacattgtgaagacaacctggagacctggtggtatgtattatattacctttcaagcaaaagaac |
678 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37488021 |
cttcttaattattagggtgcaaaatttgtgttagctgacattgtgaagacaacctggagacctggtggtatgtattatattacctttcaagcaaaagaac |
37488120 |
T |
|
| Q |
679 |
aagatcctcccaaccgccgtcctgttacaactttccaggcacagttctggaaaaggaggcctgagcctgagatcatatcacgtgccatcaaaacctaaca |
778 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37488121 |
aagatcctcccaaccgccgtcctgttacaactttccaggcacagttctggaaaaggaggcctgagcctgaggtcatatcacgtgccatcaaaacctaaca |
37488220 |
T |
|
| Q |
779 |
cacgcactatggtaacataataatgctgcattaatcttacgcatgctttcaatatgcttggagattagtttacagttcctttaaa--taattatatttga |
876 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37488221 |
cacgcactatggtaacataataatgctgcattaatcttatgcatgctttcaatatgcttggagattagtttacagttcctttaaaattaattatatttga |
37488320 |
T |
|
| Q |
877 |
ttatggtatttat-ataagc-tcagccattctacaa-tatgtcaaatag-agtttccaagcctaaatcc-aagataagatat |
953 |
Q |
| |
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|| |||||||||| |||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
37488321 |
ttttggtatttataataagcttcagccattttacaattatgtcaaatagaagtttccaagcctaaatccaaagataagatat |
37488402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 37487437 - 37487676
Alignment:
| Q |
8 |
ccgacctgccccggatagctgcgatgaaagagggaaacggcaacttaaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37487437 |
ccgacctgccccggatagctgcgatgaaagagggaaacggcaacttaaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgcttt |
37487536 |
T |
|
| Q |
108 |
gtgcatgacgatgacattgagcctcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaggataaggagattaaagtcgcca |
207 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37487537 |
gtgcatgacgatgacattaagcctcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaagataaggagattaaagtcgcca |
37487636 |
T |
|
| Q |
208 |
tggctgagtacaaacagctccgtcgcggcctaagtgtacg |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37487637 |
tggctgagtacaaacagctccgtcgcggcctaagtgtacg |
37487676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 37473070 - 37473233
Alignment:
| Q |
54 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
153 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||| || ||||||||||||||||||| |||| |||| ||| | |||| |
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| T |
37473070 |
aaatatgaatgggaatcgaaacgcgttgaagatcttgagatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37473169 |
T |
|
| Q |
154 |
tcgagtataggaataaggcacagattcaaaaggataaggagattaaagtcgccatggctgagta |
217 |
Q |
| |
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| || | ||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
37473170 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagta |
37473233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 54 - 217
Target Start/End: Original strand, 37481786 - 37481949
Alignment:
| Q |
54 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
153 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| || ||||||| |||| || ||||||||||||||||||| |||| |||| ||| | |||| |
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| T |
37481786 |
aaatatgaatgggaatcgaaacgcgtcgaagatcttgatatgagtgacttctctatgtttgacgatgacattgagccttttatgtttatatgcgcgcgct |
37481885 |
T |
|
| Q |
154 |
tcgagtataggaataaggcacagattcaaaaggataaggagattaaagtcgccatggctgagta |
217 |
Q |
| |
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| || | ||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
37481886 |
ttatttacaagaataaggcccagattcaaaaagataaggagattgaagtagccatggctgagta |
37481949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 590 - 671
Target Start/End: Original strand, 37493215 - 37493296
Alignment:
| Q |
590 |
ttagggtgcaaaatttgtgttagctgacattgtgaagacaacctggagacctggtggtatgtattatattacctttcaagca |
671 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
37493215 |
ttagggtgcaaattttgtgtttgctgacattgtgaagacaacctggagacctggtcgtacgtattacattacctttcaagca |
37493296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 37492707 - 37492865
Alignment:
| Q |
54 |
aaatatgtatgggaatcgaaacgcgttaaagatcttgagattagtgactgctctgtgcatgacgatgacattgagcctcttatatttaaatgtgatcgct |
153 |
Q |
| |
|
||||||| |||||||| ||||||| || ||||||||||||||||||||| |||| || |||||||||||||| ||||| |||| |||| |||| || | |
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| T |
37492707 |
aaatatgaatgggaattgaaacgctttgaagatcttgagattagtgacttctctatgtatgacgatgacattaagccttttatgtttatgtgtgggcgat |
37492806 |
T |
|
| Q |
154 |
tcgagtataggaataaggcacagattcaaaaggataaggagattaaagtcgccatggct |
212 |
Q |
| |
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| ||||| ||||||||| ||||||||| | ||||||||||||| | |||||| |||| |
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| T |
37492807 |
ttacgtataagaataaggctcagattcaacaagataaggagattagaatcgccagggct |
37492865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 746
Target Start/End: Original strand, 37494839 - 37494912
Alignment:
| Q |
673 |
aagaacaagatcctcccaaccgccgtcctgttacaactttccaggcacagttctggaaaaggaggcctgagcct |
746 |
Q |
| |
|
||||||||||||||| |||| || | |||||||||| |||||||||||| |||| || | ||||||||||||| |
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|
| T |
37494839 |
aagaacaagatcctcacaactgctgccctgttacaattttccaggcacaagtctgcaataagaggcctgagcct |
37494912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 38922180 - 38922286
Alignment:
| Q |
112 |
atgacgatgacattgagcctcttatatttaaatgtgatcgcttcgagtataggaataaggcacagattcaaaaggataaggagattaaagtcgccatggc |
211 |
Q |
| |
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|||| ||||||||||||||| || | |||| |||||||| || ||||||| ||||||||| |||||| || ||| |||||||| ||| |||||||| |
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| T |
38922180 |
atgatgatgacattgagccttttgtgattaagtgtgatcgatttgagtataagaataaggctcagattaaactagatgaggagattgaagcagccatggc |
38922279 |
T |
|
| Q |
212 |
tgagtac |
218 |
Q |
| |
|
|||||| |
|
|
| T |
38922280 |
ggagtac |
38922286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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