View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282-Insertion-6 (Length: 970)

Name: NF3282-Insertion-6
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282-Insertion-6
NF3282-Insertion-6
[»] chr1 (5 HSPs)
chr1 (819-968)||(34589103-34589247)
chr1 (37-159)||(34583875-34583997)
chr1 (293-354)||(34589041-34589102)
chr1 (225-267)||(34584341-34584383)
chr1 (724-828)||(5268288-5268393)
[»] chr5 (4 HSPs)
chr5 (724-786)||(40910902-40910964)
chr5 (523-633)||(17240592-17240702)
chr5 (723-792)||(2868333-2868402)
chr5 (743-792)||(6988225-6988274)
[»] chr4 (3 HSPs)
chr4 (723-819)||(43868214-43868310)
chr4 (767-837)||(33843771-33843841)
chr4 (743-828)||(1023849-1023934)
[»] chr8 (4 HSPs)
chr8 (725-792)||(10368070-10368137)
chr8 (523-618)||(6436167-6436262)
chr8 (723-838)||(37159387-37159502)
chr8 (723-792)||(35550278-35550347)
[»] chr3 (5 HSPs)
chr3 (725-819)||(30958114-30958209)
chr3 (725-819)||(30973926-30974021)
chr3 (723-787)||(39657981-39658045)
chr3 (725-806)||(42644297-42644379)
chr3 (724-809)||(27825291-27825376)
[»] chr2 (4 HSPs)
chr2 (724-818)||(43717404-43717498)
chr2 (770-876)||(44439273-44439381)
chr2 (743-837)||(15220792-15220886)
chr2 (723-792)||(6767780-6767849)
[»] chr7 (2 HSPs)
chr7 (725-804)||(42481803-42481882)
chr7 (725-787)||(35812418-35812480)
[»] chr6 (1 HSPs)
chr6 (723-841)||(9505826-9505944)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 7e-67; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 819 - 968
Target Start/End: Original strand, 34589103 - 34589247
Alignment:
Q  819 gaaagttgaacaaaaaatttgaggtaaaattaactatagaagcaaaagcttcaaatttgtgcttgaagtttaatcaattctactattctatgtttggttg 918  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||    
T  34589103 gaaagttgaacaaaaaatttgaggtaaaattaactatagaagcaaaagcttcaaatttgtgcttgaagtttaa-----tctactattctatgtttggttg 34589197  T
Q  919 aactttcggtacgcagtgatacatttgtcttttgctagttaattgtttgt 968  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34589198 aactttcggtacgcagtgatacatttgtcttttgctagttaattgtttgt 34589247  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 34583875 - 34583997
Alignment:
Q  37 gctagtgtggattttctcgtaaaatggggctctagtgtaacgatatcaagtagaagttgttgaatactcccctaatgatttgaagaccattctcctcggt 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34583875 gctagtgtggattttctcgtaaaatggggctctagtgtaacgatatcaagtagaagttgttgaatactcccctaatgatttgaagaccattctcctcggt 34583974  T
Q  137 ggttccttgaggacccttgctcc 159  Q
    |||||||||||||||||||||||    
T  34583975 ggttccttgaggacccttgctcc 34583997  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 34589041 - 34589102
Alignment:
Q  293 ggtatttgatcaagtcctttagttaattcaaataagtttaatgatactcaattactattttc 354  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||    
T  34589041 ggtatttgatcaagtcttttagttaattcaagtaagtttaatgatactcaattagtattttc 34589102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 34584341 - 34584383
Alignment:
Q  225 attgtagaatgttctaaaatttcttgaatgctctttctgtttc 267  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  34584341 attgtagaatgttctaaaatttcttgaatgctctttttgtttc 34584383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 828
Target Start/End: Complemental strand, 5268393 - 5268288
Alignment:
Q  724 aaattgatttt-aaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaagaaa 822  Q
    ||||||||||| ||||||| |||| ||||||||||| || |   ||||||| |||||||||||||||||| | | || | ||||||| |||||||||  |    
T  5268393 aaattgattttgaaatgaactgatcttgtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgtaaaagtga 5268294  T
Q  823 gttgaa 828  Q
    ||||||    
T  5268293 gttgaa 5268288  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 724 - 786
Target Start/End: Original strand, 40910902 - 40910964
Alignment:
Q  724 aaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaa 786  Q
    ||||||||||||||||||||||||||||||||||  |||| | ||||||| ||||||||||||    
T  40910902 aaattgattttaaatgaagtgattttgtaaaatttattttgaataaaagtgagttgaatgtaa 40910964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 523 - 633
Target Start/End: Complemental strand, 17240702 - 17240592
Alignment:
Q  523 aaagtggctaacatattttgaagttaggggcttttttgtattttctcttgagtcagggatcattatgacattgaggtgtacacccaaagaccaaaatgat 622  Q
    |||||||||||   |||||||||| |||| || ||||||||||| ||||||||| | || ||||||||||  |||||  ||| | ||| | ||||| |||    
T  17240702 aaagtggctaatgaattttgaagtcagggactcttttgtattttttcttgagtcggagaccattatgacaacgaggtacacatctaaaaaacaaaacgat 17240603  T
Q  623 tgtttaccctt 633  Q
    ||||| |||||    
T  17240602 tgtttcccctt 17240592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 792
Target Start/End: Original strand, 2868333 - 2868402
Alignment:
Q  723 aaaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgat 792  Q
    |||||||||||||   ||| | |||||||| ||||| |||||  ||||||| ||||||||||||||||||    
T  2868333 aaaattgattttagtagaattaattttgtagaattgattttagttaaaagtgagttgaatgtaaagtgat 2868402  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 792
Target Start/End: Complemental strand, 6988274 - 6988225
Alignment:
Q  743 tgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgat 792  Q
    |||||||||||||||| |||||| ||||||| |||||||| |||| ||||    
T  6988274 tgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgat 6988225  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 723 - 819
Target Start/End: Complemental strand, 43868310 - 43868214
Alignment:
Q  723 aaaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaag 819  Q
    |||||||||||| |||||| |||||||||||||||  || ||  ||||||| ||||||| |||||||||| | | || ||||| ||| |||||||||    
T  43868310 aaaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaag 43868214  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 767 - 837
Target Start/End: Complemental strand, 33843841 - 33843771
Alignment:
Q  767 taaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaagaaagttgaacaaaaaatt 837  Q
    ||||||| ||||| |||||||||||| ||| || ||||||||| |||||| ||  |||||||||| |||||    
T  33843841 taaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaatt 33843771  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 828
Target Start/End: Original strand, 1023849 - 1023934
Alignment:
Q  743 tgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaagaaagttgaa 828  Q
    ||||| ||||||| || |||||  ||||||| ||||||| |||||||||| | | || |||||||||||||| ||||  |||||||    
T  1023849 tgattctgtaaaaatgattttagctaaaagtgagttgaaggtaaagtgatttttgtttggatatattgatgtgaaagtgagttgaa 1023934  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 725 - 792
Target Start/End: Complemental strand, 10368137 - 10368070
Alignment:
Q  725 aattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgat 792  Q
    |||||||||| | |||| || ||||||||||||| |||| ||||||||| ||||||| ||||||||||    
T  10368137 aattgattttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgat 10368070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 618
Target Start/End: Complemental strand, 6436262 - 6436167
Alignment:
Q  523 aaagtggctaacatattttgaagttaggggcttttttgtattttctcttgagtcagggatcattatgacattgaggtgtacacccaaagaccaaaa 618  Q
    ||||||| ||||| |||||| ||| ||||  |||||  | ||||||||||||| ||||| |||||||||| |||||||  || |||| ||||||||    
T  6436262 aaagtggttaacaaattttggagtcagggaatttttcttgttttctcttgagttagggaccattatgacaatgaggtgctcatccaaggaccaaaa 6436167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 838
Target Start/End: Original strand, 37159387 - 37159502
Alignment:
Q  723 aaaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaagaaa 822  Q
    |||||| ||||| || ||| ||||| |||||||||  |||||| ||||||  ||||||||||||||| |||||| || ||||| | | || |||||| |     
T  37159387 aaaattaattttgaacgaattgattgtgtaaaattaattttaactaaaagggagttgaatgtaaagtaatatatgtttggatacaattatataaaagtat 37159486  T
Q  823 gttgaacaaaaaattt 838  Q
    || |||||| ||||||    
T  37159487 gtggaacaataaattt 37159502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 792
Target Start/End: Complemental strand, 35550347 - 35550278
Alignment:
Q  723 aaaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgat 792  Q
    |||||||||||| | |||| |||||||||||||||| |||| |  |||||| |||| | |||||||||||    
T  35550347 aaaattgattttgattgaattgattttgtaaaattgatttttatcaaaagtgagtttagtgtaaagtgat 35550278  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 725 - 819
Target Start/End: Complemental strand, 30958209 - 30958114
Alignment:
Q  725 aattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaag-tgatatattttcggatatattgatgtaaaag 819  Q
    |||||||||| |||||| |||||||||||||||| ||||   |||| || |||||||||||||| | || ||| || ||||||||| |||||||||    
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaag 30958114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 725 - 819
Target Start/End: Complemental strand, 30974021 - 30973926
Alignment:
Q  725 aattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaag-tgatatattttcggatatattgatgtaaaag 819  Q
    |||||||||| |||||| |||||||||||||||| ||||   |||| || |||||||||||||| | || ||| || ||||||||| |||||||||    
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaag 30973926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 723 - 787
Target Start/End: Original strand, 39657981 - 39658045
Alignment:
Q  723 aaaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaa 787  Q
    |||||||||||| ||| || ||||| |||||||||| |||||  |||||||| ||||||||||||    
T  39657981 aaaattgattttgaataaattgattatgtaaaattgattttacttaaaagttcgttgaatgtaaa 39658045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 725 - 806
Target Start/End: Complemental strand, 42644379 - 42644297
Alignment:
Q  725 aattgattttaaatgaagtgattttgtaaaa-ttgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatat 806  Q
    |||||||||| | |||| ||||||| ||||| ||| |||||  ||||||| |||||||||||||||||| ||| || ||||||    
T  42644379 aattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttggatat 42644297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 809
Target Start/End: Original strand, 27825291 - 27825376
Alignment:
Q  724 aaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatatt 809  Q
    ||||||||||| |||||| | ||||| |||||||| || | | |||||||||||||||| |||| | |||||| || | |||||||    
T  27825291 aaattgattttgaatgaatttattttataaaattgattatgactaaaagttagttgaatataaaataatatatgtttgaatatatt 27825376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 724 - 818
Target Start/End: Complemental strand, 43717498 - 43717404
Alignment:
Q  724 aaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaa 818  Q
    ||||||||| | |||||| | |||||||||||||| || ||| |||| |||||| || ||||||||||| ||| || |||||||||  |||||||    
T  43717498 aaattgattctgaatgaactaattttgtaaaattgattctaactaaatgttagtcgagtgtaaagtgatttatgtttggatatatttgtgtaaaa 43717404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 770 - 876
Target Start/End: Complemental strand, 44439381 - 44439273
Alignment:
Q  770 aagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaagaaagttgaacaaaaaatttga--ggtaaaattaactatagaagcaaaagc 867  Q
    |||| |||| ||||||||||||| ||| || |||||| || |||||||||  |||||||||| ||||||||  | |||||| || | ||||| |||||||    
T  44439381 aagtgagttaaatgtaaagtgatttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagc 44439282  T
Q  868 ttcaaattt 876  Q
    | |||||||    
T  44439281 tccaaattt 44439273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 743 - 837
Target Start/End: Original strand, 15220792 - 15220886
Alignment:
Q  743 tgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaagaaagttgaacaaaaaatt 837  Q
    ||||||||||| |||| || | |  |||||| |||||||||||||||||| ||| || ||||| ||| |||| ||||  |||||||||| |||||    
T  15220792 tgattttgtaatattgattatgacgaaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 723 - 792
Target Start/End: Complemental strand, 6767849 - 6767780
Alignment:
Q  723 aaaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgat 792  Q
    |||| ||||||| ||| || |||||||||||||||| || | | ||||| | ||||||||||||||||||    
T  6767849 aaaaatgattttgaataaactgattttgtaaaattgattgtgattaaaaatgagttgaatgtaaagtgat 6767780  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 725 - 804
Target Start/End: Original strand, 42481803 - 42481882
Alignment:
Q  725 aattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggat 804  Q
    |||||||||||| |||| ||||| |||||||||| || | |  |||||| ||||||||||||| |||| ||| |||||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgttcggat 42481882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 725 - 787
Target Start/End: Complemental strand, 35812480 - 35812418
Alignment:
Q  725 aattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaa 787  Q
    |||| ||||| |||||| |||||||||||||||| |||| |  |||| |||||||||||||||    
T  35812480 aattaattttgaatgaattgattttgtaaaattgattttgaaaaaaaattagttgaatgtaaa 35812418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 723 - 841
Target Start/End: Complemental strand, 9505944 - 9505826
Alignment:
Q  723 aaaattgattttaaatgaagtgattttgtaaaattgtttttaagtaaaagttagttgaatgtaaagtgatatattttcggatatattgatgtaaaagaaa 822  Q
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T  9505944 aaaattgattttgaatgaattgattctgtaaagtttattttggctaaaattgagttgaaggcaaagtgatatatgttattatatattcatgtaaaagtgt 9505845  T
Q  823 gttgaacaaaaaatttgag 841  Q
    ||||||||| |||||||||    
T  9505844 gttgaacaataaatttgag 9505826  T

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