View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3282-Insertion-8 (Length: 938)
Name: NF3282-Insertion-8
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282-Insertion-8 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0094 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 819; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 6 - 938
Target Start/End: Original strand, 38195609 - 38196543
Alignment:
| Q |
6 |
caactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38195609 |
caactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccagatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaa |
38195708 |
T |
|
| Q |
106 |
gtagctaatatgtttccaaattcagattggttattagttatgtcaccaatgctttctaccactagcttgcaatctagctcagtatgcacttttg-catac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38195709 |
gtagctaatatgtttccaaattcagattggttattagttatgtcaccaatgctttctaccactagcttgcaatctagctcagtatgcacttttgacatac |
38195808 |
T |
|
| Q |
205 |
ccaaatgaccaagccaaataatagcatctcttagtcccaacgcttcagcttcttgcggaggaggagtaccttcataccatttagttaatgctttaataaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38195809 |
ccaaatgaccaagccaaataatagcatctcttagtcccaacgcttcagcttcttgcggaggaggagtaccttcataccatttagttaatgctttaataaa |
38195908 |
T |
|
| Q |
305 |
atggccttgatgattcctgagacacataccaattccaaagcacctttgttcaccaaatagcgccgcatcaacgttacacttgacataatcttcgttcggt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38195909 |
atggccttgatgattcctgagacacataccaattccaaagcacctttgttcaccaaatagcgccgcatcaacgttacacttgacataatcttcgttcggt |
38196008 |
T |
|
| Q |
405 |
ggccgccacacctgtaccacctgctgctgtgaatgctggtgttgcaggttggactgctgaacctgtgattgcaggctgccatttatgcgtgctgcctgcc |
504 |
Q |
| |
|
| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38196009 |
gactgccagacctgtaccatctgctgctgtgaatgctggtgttgcaggttggactgctgaacctgtgattgcaggctgccatttatgcgtgctgcctgcc |
38196108 |
T |
|
| Q |
505 |
actgcaaaagaacctcgggtgctagctgaacagaaaaccgaacttccttcatatctccttcccacaccttatcattcctccgacgccataaacaccacaa |
604 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38196109 |
actgcaaaagaacctcgcgtgctagctgaacagaaaaccgaacttccttcatatctccttcccacaccttatcattcctccgacgccataaacaccacaa |
38196208 |
T |
|
| Q |
605 |
catcatagcgatataagtacatagttgtgacggtaatctgcataataaactnnnnnnnncattaagcaaaattcgaaactgtagcagcagcttcagaaat |
704 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38196209 |
catcatggcgatatcagtacatagttgtgttggtaatctgcataataaact-aaaaaaacattaagcaaaattcgaaactgtagcagcagcttcagaaat |
38196307 |
T |
|
| Q |
705 |
agtttcccataacccagcaacttgccaaacttgctttgccgcttcagaaccaataaagacgtgccaatcattctcgtaattgttctca-aatgtggactg |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| | |
|
|
| T |
38196308 |
agtttcccataacccagcaacttgccaaacttgctttgccgcttcacaaccaataaagacgtgcctatcattctcgtaattgttctcacaatgtggacag |
38196407 |
T |
|
| Q |
804 |
caatctgtgcactccaaagaaactcttttacccgttgcggaaatctaagcttccacattttctcccact-ccctggtactcggtactcttcattatcaat |
902 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38196408 |
caatctgtgcactccaaagaaacacttttacccgctgcggaaatctaagcttccacattttctcccactcccctggtactcggtactcttcattatcaat |
38196507 |
T |
|
| Q |
903 |
tagagtctctatagcatatcgatatgctgatttcac |
938 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38196508 |
tagagtctccatagcatatcgatatgctgatttcac |
38196543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 4097876 - 4097818
Alignment:
| Q |
34 |
gcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa |
92 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||||||||||||| || |||||||| |
|
|
| T |
4097876 |
gcgacataatttgctagtctcgtgataaaacttatcttaaagtttgggaattgttgtaa |
4097818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 10486560 - 10486618
Alignment:
| Q |
34 |
gcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa |
92 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||| |
|
|
| T |
10486560 |
gcgacataatttgcttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaa |
10486618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 38176303 - 38176370
Alignment:
| Q |
25 |
aaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa |
92 |
Q |
| |
|
||||||||||||||| ||| |||||||||| | ||||||||||||||||||| ||| |||||||| |
|
|
| T |
38176303 |
aaactatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagtttgtaaattgttgtaa |
38176370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 246 - 550
Target Start/End: Complemental strand, 29123109 - 29122805
Alignment:
| Q |
246 |
gcttcagcttcttgcggaggaggagtaccttcataccatttagttaatgctttaataaaatggccttgatgattcctgagacacataccaattccaaagc |
345 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29123109 |
gcttcagcttcgtgcggaggaggagtaccttcataccatttagttaatgctttaataaaatggccttgatgattcctgagaaacataccaattccaaagc |
29123010 |
T |
|
| Q |
346 |
acctttgttcaccaaatagcgccgcatcaacgttacacttgacataatcttcgttcggtggccgccacacctgtaccacctgctgctgtgaatgctggtg |
445 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
29123009 |
acctttgttcaccaaatagcgccgcgtcaacgttacacttgacataatcttcgttcggtggctgccagacctgtaccatctgctgctgtgaatgctggtg |
29122910 |
T |
|
| Q |
446 |
ttgcaggttggactgctgaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgggtgctagctgaacagaaaaccga |
545 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29122909 |
ttgcatgttggactgctgaacctgtgattgcaggctgccatttatgcgtgctgcctgccactgcaaaagaacctcgcgtgctagctgaacagaaaaccga |
29122810 |
T |
|
| Q |
546 |
acttc |
550 |
Q |
| |
|
||||| |
|
|
| T |
29122809 |
acttc |
29122805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 25501008 - 25500671
Alignment:
| Q |
22 |
gctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttc |
121 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| | || ||||||||||||||||||| || | ||||| | ||||||||||||| | || || | |
|
|
| T |
25501008 |
gctaaactatgggcgacacaatttgcttgtctccttacataatttatcttaaagtttggaaaatgatataacagacctctacaagtagccatgatattcc |
25500909 |
T |
|
| Q |
122 |
caaattcagattggttattagttatgtcaccaatgctttctaccactagcttgcaatctagctcagtatgcactttt-gcatacccaaatgaccaagcca |
220 |
Q |
| |
|
|||||||||| | |||| ||| | ||| ||||||| || |||||||||||||||||||||||| ||||||||||| ||| | ||| ||||||||||| |
|
|
| T |
25500908 |
caaattcagactagttaatagatccatcaacaatgctgtcaaccactagcttgcaatctagctcaatatgcacttttggcagagccatttgaccaagcca |
25500809 |
T |
|
| Q |
221 |
aataatagcatctcttagtcccaacgcttcagcttcttgcggaggaggagtaccttcataccatttagttaatgctttaataaaatggccttgatgattc |
320 |
Q |
| |
|
| |||||||||||||| ||||||||||| ||||| || |||||||||||||||||||| |||| ||| ||||| |||||||| ||| || |||| |
|
|
| T |
25500808 |
taaaatagcatctcttaaacccaacgcttctgcttccaatggtggaggagtaccttcataccacttagataacgcttttataaaatgacctcgagaattc |
25500709 |
T |
|
| Q |
321 |
ctgagacacataccaattccaaagcacctttgttcacc |
358 |
Q |
| |
|
|| | ||||||||||| ||||| || | ||||||||| |
|
|
| T |
25500708 |
ctaatacacataccaaaaccaaaacagcgttgttcacc |
25500671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 29123233 - 29123123
Alignment:
| Q |
5 |
acaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctaca |
104 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
29123233 |
acaactttgccgcccgagctaaattatgggcggcataatttgcttgtctccggatgaaacttatcttaacgtttagaaagtgttgtaacaaatctctaca |
29123134 |
T |
|
| Q |
105 |
agtagctaata |
115 |
Q |
| |
|
||||| ||||| |
|
|
| T |
29123133 |
agtagttaata |
29123123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 709 - 785
Target Start/End: Complemental strand, 25500365 - 25500289
Alignment:
| Q |
709 |
tcccataacccagcaacttgccaaacttgctttgccgcttcagaaccaataaagacgtgccaatcattctcgtaatt |
785 |
Q |
| |
|
||||||| |||||| |||||||| ||||| ||||| || ||| | |||||||| |||||||||||||| || ||||| |
|
|
| T |
25500365 |
tcccatagcccagctacttgccacacttgttttgcagcctcacagccaataaacacgtgccaatcattttcataatt |
25500289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 1527318 - 1527251
Alignment:
| Q |
25 |
aaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa |
92 |
Q |
| |
|
||||||||||||||| ||| |||||||||| | ||||||||||||||||||| ||| |||||||| |
|
|
| T |
1527318 |
aaactatgagcgacaacattcgcttgtctcctaacaaaacttatcttaaagtttgtaaattgttgtaa |
1527251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 5 - 316
Target Start/End: Original strand, 47813860 - 47814173
Alignment:
| Q |
5 |
acaactttgtcgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctaca |
104 |
Q |
| |
|
||||||||| || ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47813860 |
acaactttgccgttcgaactaaacaatggacgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctgca |
47813959 |
T |
|
| Q |
105 |
agtagctaatatgtttccaaattcagattggttattagttatgtcaccaatgctttctaccactagcttgcaatctagctcagtatgcacttttg-cata |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
47813960 |
agtagctaatatgtttccaaattcagattgatctttagttctgtcaccaatgctttctaccactagcttgcaatctagctcaatatgcacttttgacata |
47814059 |
T |
|
| Q |
204 |
cccaaatgaccaagccaaataatagcatctcttagtcccaacgcttcagcttcttgcggaggaggagtaccttcataccatttagttaatgc-tttaata |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
47814060 |
cccaaatgaccaagccaaataatagcatctcttagtcccaacgcttcagcttcttgcggaggaggagtaccttcatgccatttagttaatgcttttaata |
47814159 |
T |
|
| Q |
303 |
aaatggccttgatg |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47814160 |
aaatggccttgatg |
47814173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 27 - 389
Target Start/End: Complemental strand, 25790863 - 25790497
Alignment:
| Q |
27 |
actatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaat |
126 |
Q |
| |
|
|||||||||||||||||||||||| || | ||||| ||||||||||| |||||| |||||| ||||||| || |||||||| ||| ||||| |||||| |
|
|
| T |
25790863 |
actatgagcgacataatttgcttgactacatatgaagcttatcttaaaatttggatagtgttataacaaaactgtacaagtacctataatgttgccaaat |
25790764 |
T |
|
| Q |
127 |
tcagattggttattagttatgtcaccaatgctttctaccactagcttgcaatctagctc--agtatgcacttttg-catacccaaatgaccaagccaaat |
223 |
Q |
| |
|
||| |||||||||||||| | ||| |||| |||||| ||||||||| || |||||||| | |||||||||||| || ||| | |||||||| ||| |
|
|
| T |
25790763 |
tcatattggttattagttctatcaaaaatgatttctatcactagcttacactctagctcaaattatgcacttttgtcaaacctgattgaccaagtcaaga |
25790664 |
T |
|
| Q |
224 |
aatagcatctcttagtcccaacgcttcagcttcttgcggaggaggagtaccttcataccatttagttaatgctttaataaaatggcct-tgatgattcct |
322 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| || |||||| ||||||||||||| || | || | | |
|
|
| T |
25790663 |
aatagcatctcttaatcccaacgcttctccttctgatggaggaggagtaccttcataccactttgttaatactttaataaaatgatctaaaaaaatgcat |
25790564 |
T |
|
| Q |
323 |
gagacacataccaattccaaagcacctttgttcaccaaatagcgccgcatcaacgttacacttgaca |
389 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||| || |||||| |||||||||||| |
|
|
| T |
25790563 |
gagacacataccaatttcaaagcacctttagtcaccaaatagtgctacatcaatattacacttgaca |
25790497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 34 - 262
Target Start/End: Complemental strand, 11468863 - 11468648
Alignment:
| Q |
34 |
gcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttccaaattcagatt |
133 |
Q |
| |
|
|||| ||||||||||||| | | |||||||||||| |||||||||| ||| |||||||| ||||| |||| | || ||| |||||| ||||||| |||| |
|
|
| T |
11468863 |
gcgatataatttgcttgttttcagatgaaacttattttaaagtttgaaaaatgttgtaataaatccctactaatatctataatgttttcaaattcggatt |
11468764 |
T |
|
| Q |
134 |
ggttattagttatgtcaccaatgctttctaccactagcttgcaatctagctcagtatgcacttttg-catacccaaatgaccaagccaaataatagcatc |
232 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| |||||||||| | |||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
11468763 |
ggttat-agttatgtcaacaatgctttctaccactagcttacaatctagcttaatatgcacttttgacatac-------------ccaaacaatagcatc |
11468678 |
T |
|
| Q |
233 |
tcttagtcccaacgcttcagcttcttgcgg |
262 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
11468677 |
tcttagtcccaacgcttcagcttattgcgg |
11468648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 43391109 - 43391165
Alignment:
| Q |
22 |
gctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagttt |
78 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
43391109 |
gctaaagtatgggcgacataatttgcttgtctccgaataaaacttatcataaagttt |
43391165 |
T |
|
Back To:
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Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 4816765 - 4816479
Alignment:
| Q |
22 |
gctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaacaaatctctacaagtagctaatatgtttc |
121 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||| |||||||| |||| | | || | |
|
|
| T |
4816765 |
gctaagctatgggcgacataatttgcttgtctccttacataatttatcttaaagtttggaaaatgttgtaacaaagctctacaattagccatgctattac |
4816666 |
T |
|
| Q |
122 |
caaattcagattggttattagttatgtcaccaatgctttctaccactagcttgcaatctagctcagtatgcacttttg-catacccaaatgaccaagcca |
220 |
Q |
| |
|
|||||||| |||||||||||| | ||| ||| | || || |||||||| |||| ||| ||| |||||||||||| ||||| |||||||||||||| |
|
|
| T |
4816665 |
caaattcaaattggttattagagctatcaacaacgtcgtcgacaactagcttacaatatagttcaatatgcacttttgatatacctaaatgaccaagcca |
4816566 |
T |
|
| Q |
221 |
aataatagcatctcttagtcccaacgcttcagcttcttgcggaggaggagtaccttcataccatttagttaatgctttaataaaatg |
307 |
Q |
| |
|
| ||| ||||| |||| |||| | || |||||||||| | |||| ||| |||||||| || ||||| ||| |||||||||| |
|
|
| T |
4816565 |
gaaaatggcatcccttaatcccgttgatttagcttcttgcaccgaaggaacaccatcataccactttgttaaagctataataaaatg |
4816479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 358
Target Start/End: Complemental strand, 52176355 - 52176261
Alignment:
| Q |
264 |
ggaggagtaccttcataccatttagttaatgctttaataaaatggccttgatgattcctgagacacataccaattccaaagcacctttgttcacc |
358 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |||| |||||||| |||||| |||||| | ||||||||||| ||||| |||| ||||||||| |
|
|
| T |
52176355 |
ggaggagtgccttcataccacttagttaacacttttataaaatgaccttgagaattcctaatacacataccaaaaccaaaacaccgttgttcacc |
52176261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 19023325 - 19023396
Alignment:
| Q |
21 |
agctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttggaaagtgttgtaa |
92 |
Q |
| |
|
|||||| ||||||| || |||||||| |||||||| | ||||||||||||||||||| ||| |||||||| |
|
|
| T |
19023325 |
agctaagctatgagtgatataatttgtttgtctcctaacaaaacttatcttaaagtttgaaaattgttgtaa |
19023396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 546 - 618
Target Start/End: Original strand, 6508581 - 6508653
Alignment:
| Q |
546 |
acttccttcatatctccttcccacaccttatcattcctccgacgccataaacaccacaacatcatagcgatat |
618 |
Q |
| |
|
||||| |||||||| |||||| |||| |||| |||||| | ||||||||||||||| |||||||| ||||||| |
|
|
| T |
6508581 |
acttctttcatatcaccttcctacactttattattccttctacgccataaacaccataacatcatcgcgatat |
6508653 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 6508228 - 6508300
Alignment:
| Q |
163 |
accactagcttgcaatctagctcagtatgcacttttgcata--cccaaatgaccaagccaaataatagcatctc |
234 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| ||| || |||| ||||||||| | ||||||||||| |
|
|
| T |
6508228 |
accactagcttacaatctagctcaatatgcacttttg-ataggcctaaattaccaagccataaaatagcatctc |
6508300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 2704022 - 2704076
Alignment:
| Q |
24 |
taaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagttt |
78 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
2704022 |
taaagtatgagcgacataatttgcttgtctcctaacaaaacttatcttaaagttt |
2704076 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 15074404 - 15074463
Alignment:
| Q |
22 |
gctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttgga |
81 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
15074404 |
gctatactatgagcgacacaatttgcttgtcttctaacaaaacttatcttaaagtttgga |
15074463 |
T |
|
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Target: scaffold0094 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 15287 - 15221
Alignment:
| Q |
15 |
cgcccgagctaaactatgagcgacataatttgcttgtctccggatgaaacttatcttaaagtttgga |
81 |
Q |
| |
|
||||| |||||| ||||||||||| |||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
15287 |
cgccctagctaacgtatgagcgacaaaattagcttgtctcctaacaaaacttatcttaaagtttgga |
15221 |
T |
|
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