View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_high_2 (Length: 456)
Name: NF3282_high_2
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 160 - 448
Target Start/End: Original strand, 50752781 - 50753068
Alignment:
| Q |
160 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgttnnnnnnnntggaaa |
259 |
Q |
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| T |
50752781 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgt-caaaaaaatggaaa |
50752879 |
T |
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| Q |
260 |
atctctccgctcaaaccttgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttccttcatctatatattctcta |
359 |
Q |
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| T |
50752880 |
atctctccactcaaaccctgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttcctccatctatatattctcta |
50752979 |
T |
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| Q |
360 |
tccagtacccttattctcacactctcatacattcacgttcttcgcatttattagtctctctcatcacatttcactctctatttcatctc |
448 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50752980 |
tccagtacccttattctcacactctcatatattcaccttcttcgcatttattagtctctctcatcacatttcactctctatttcctctc |
50753068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 50752075 - 50752235
Alignment:
| Q |
1 |
atgatggttgctaaacacaatccaatggaagacaatatggaaatgtgtttgtttcatgatgaaccttttacttctgaaaatagtttaaaacatacaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
50752075 |
atgatggttgctaaacacaatccaatggaagacaatatggaaatgtgtttgtttc-tgatcaaccttttacttttgaaaatagtttaaaacatacaaata |
50752173 |
T |
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| Q |
101 |
ttaaaaatagttgtgatggatacggatgtacacgaagtcgaactaaaaagtgagtggccttt |
162 |
Q |
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| T |
50752174 |
ttaaaaatagttgtgatggatacggatgaacatgaagtcgaactagaaagtgagtggccttt |
50752235 |
T |
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