View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_high_22 (Length: 249)
Name: NF3282_high_22
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_high_22 |
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| [»] chr5 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 27561473 - 27561711
Alignment:
| Q |
11 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt |
110 |
Q |
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| T |
27561473 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccact |
27561572 |
T |
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| Q |
111 |
caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttcttt |
210 |
Q |
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| T |
27561573 |
caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttcgatcgcttcaactgtgtttccatcatccccatttcttt |
27561672 |
T |
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| Q |
211 |
agataaagctgaagatatcacacgaaactcagctttgat |
249 |
Q |
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| T |
27561673 |
agataaagctgaagatatcacacgaaactcagctttgat |
27561711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 15 - 249
Target Start/End: Original strand, 36668348 - 36668584
Alignment:
| Q |
15 |
gactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaat |
114 |
Q |
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| T |
36668348 |
gactcaaattatctagataactttctgtaaaagacctatcacaaagaaggtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaat |
36668447 |
T |
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| Q |
115 |
ttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag |
212 |
Q |
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| T |
36668448 |
ttctctcttagcgaatgtgctttcgcacgcaatgatacagcttcatgagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag |
36668547 |
T |
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| Q |
213 |
ataaagctgaagatatcacacgaaactcagctttgat |
249 |
Q |
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| T |
36668548 |
ataaggctgaagacatcacaccaaactcagctttgat |
36668584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 36672887 - 36672767
Alignment:
| Q |
130 |
tgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccca-tttctttagataaagctgaagat-a |
227 |
Q |
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| T |
36672887 |
tgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactgatcttctgtcatcccaattttttttagataaagct-atgatca |
36672789 |
T |
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| Q |
228 |
tcacacgaaactcagctttgat |
249 |
Q |
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| T |
36672788 |
tcacacgtaactcaactttgat |
36672767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 27563519 - 27563446
Alignment:
| Q |
148 |
tacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccc-atttctttagataaagct |
220 |
Q |
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| T |
27563519 |
tacaacttcaagagctgcatccttctatcacttcaactgctcttccatcatccccgatttttttagataaagct |
27563446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 24202719 - 24202480
Alignment:
| Q |
12 |
acagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattc |
111 |
Q |
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||||||||||||||| |||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| || |
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| T |
24202719 |
acagactcaaattatctagataaattgctgtaaaagacctatcacaaagtcggtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactc |
24202620 |
T |
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| Q |
112 |
aatttcg--ctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctt |
209 |
Q |
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||||||| || | ||||||||||||||||||||| | ||| |||| ||| |||||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
24202619 |
aatttcgctcttagtgaatgtgctttctcacgcaaggatacggcttcaagtgctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctt |
24202520 |
T |
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| Q |
210 |
tagataaagctgaagatatcacacgaaactcagctttgat |
249 |
Q |
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| T |
24202519 |
tagataaagttgaagccataacacgaaactcaactttgat |
24202480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 29410876 - 29411116
Alignment:
| Q |
11 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt |
110 |
Q |
| |
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|||| ||||||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||| || |||||||||| ||| | |
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| T |
29410876 |
cacaaactcaaattatcaagatgaatttctgtaaaagacttatcacaaagtaggcgagaaagaaaatgaaagggtactttatgcgaataacctttccact |
29410975 |
T |
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| Q |
111 |
caattt--cgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttct |
208 |
Q |
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|||||| | || | |||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||| |
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| T |
29410976 |
caatttttctcttagtgaatgcgctttctcacgtaatgatacagcttcaagagctgcatctttccatcgcttcacctgcgcgtccatcatccccatttct |
29411075 |
T |
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| Q |
209 |
ttagataaagctgaagatatcacacgaaactcagctttgat |
249 |
Q |
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| T |
29411076 |
ttagataaagctgaagccatcacacgaaactcggctttgat |
29411116 |
T |
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