View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_high_23 (Length: 239)
Name: NF3282_high_23
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 31194959 - 31194769
Alignment:
| Q |
26 |
aagctaacatttgtttattaaaaactgtattatttatctttcttattaaaaagatagtacaccagtactataacttatactaacaatgaatcaaaaaact |
125 |
Q |
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| T |
31194959 |
aagctaacatttgtttattaaaaactgtattatttatctttcttattaaaaagatagtacaccagtactataacttatactaacaatgaatcaaaaaact |
31194860 |
T |
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| Q |
126 |
aaatagttatatcaagcattgtataccttcccaaagttgaacttagtaaatcataatgagaattggtagcaatttcaagttcaagagatgt |
216 |
Q |
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| T |
31194859 |
aaatagttatatcaagcattgtataccttcccaaagttgaacttagtaaatcataatgagaattggtagcaatttcaagttcaagagatgt |
31194769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 31150029 - 31150091
Alignment:
| Q |
147 |
tataccttcccaaagttgaacttagtaaatcataatgagaattggtagcaatttcaagttcaa |
209 |
Q |
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| T |
31150029 |
tataccttcccaagattgaacccagtaaatcataatgagaatatgtagcagtttcaaggtcaa |
31150091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 31168321 - 31168383
Alignment:
| Q |
147 |
tataccttcccaaagttgaacttagtaaatcataatgagaattggtagcaatttcaagttcaa |
209 |
Q |
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| T |
31168321 |
tataccttcccaagattgaacccagtaaatcataatgagaatatgtagcagtttcaaggtcaa |
31168383 |
T |
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