View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282_high_5 (Length: 417)

Name: NF3282_high_5
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282_high_5
NF3282_high_5
[»] chr7 (5 HSPs)
chr7 (16-175)||(13416994-13417153)
chr7 (17-109)||(1986092-1986184)
chr7 (22-98)||(14076541-14076617)
chr7 (22-98)||(14386569-14386645)
chr7 (17-104)||(15572052-15572139)
[»] scaffold2041 (1 HSPs)
scaffold2041 (313-402)||(1048-1137)
[»] chr8 (2 HSPs)
chr8 (204-274)||(22773700-22773770)
chr8 (292-320)||(22773788-22773816)
[»] chr6 (5 HSPs)
chr6 (23-109)||(6921487-6921573)
chr6 (23-114)||(6948012-6948103)
chr6 (17-114)||(6943086-6943183)
chr6 (17-104)||(6954661-6954748)
chr6 (25-109)||(6935355-6935439)
[»] chr4 (1 HSPs)
chr4 (25-78)||(53774701-53774754)
[»] chr5 (1 HSPs)
chr5 (22-98)||(18964981-18965057)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 13417153 - 13416994
Alignment:
Q  16 attacaattgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctacgtgatc 115  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||    
T  13417153 attacaattgaacaatttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcgatgttgtgaggaagagctacgcgatc 13417054  T
Q  116 gtccaagacttcatccagctctttctatgttgaatggttgtctttgtttttcttatgatt 175  Q
     ||||| ||||| |||  |||||||||||||||||| |||||||||||||||||||||||    
T  13417053 ctccaatacttcctcctactctttctatgttgaatgattgtctttgtttttcttatgatt 13416994  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 1986184 - 1986092
Alignment:
Q  17 ttacaattgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctac 109  Q
    ||||| |||||||| |||| |||||||| ||||  |||||||| |||| |||||| ||||||||||| ||||||| |||||| ||||||||||    
T  1986184 ttacagttgaacaacttgtaattatctcacttgatttggggacagagagatatacacagttgttgctccctcgatattgtgatgaagatctac 1986092  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 14076541 - 14076617
Alignment:
Q  22 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtga 98  Q
    ||||| ||||||||||||||||| ||||  |||||||||||||||||||| || ||||| || |||| |||||||||    
T  14076541 attgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtga 14076617  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 14386569 - 14386645
Alignment:
Q  22 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtga 98  Q
    ||||| ||||||||||||||||| ||||  |||||||||||||||||||| || ||||| || |||| |||||||||    
T  14386569 attgagcaatttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctccatgttgtga 14386645  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 15572139 - 15572052
Alignment:
Q  17 ttacaattgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaaga 104  Q
    |||| ||||||||||||||||| ||||||||||  |||||||| || |||||||  || | | ||||||||||||||||||| |||||    
T  15572139 ttacgattgaacaatttgtgataatctcgcttgatttggggacagaaacatatagacaatcgatgctacctcgatgttgtgatgaaga 15572052  T

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Target: scaffold2041 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold2041
Description:

Target: scaffold2041; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 313 - 402
Target Start/End: Complemental strand, 1137 - 1048
Alignment:
Q  313 tataacttgtatttggttttattcgatattctcgtctcccttgtacttcccactactagccattcgtccggtggatccaactccatagtg 402  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1137 tataacttgtattcggttttattcgatattctcgtctcccctgtacttcccactactagccattcgtccggtggatccaactccatagtg 1048  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 22773700 - 22773770
Alignment:
Q  204 agttcgtctatttttcagttatataacaaagccccagttacaatgggctctttctttagtgaaaggctcca 274  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||    
T  22773700 agttcgtctatttttcagttatataacaaagccccagttatagcgggctctttctttagtgaaaggctcca 22773770  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 22773788 - 22773816
Alignment:
Q  292 gttagatatagcttgaccatttataactt 320  Q
    |||||||||||||||||||||||||||||    
T  22773788 gttagatatagcttgaccatttataactt 22773816  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 6921573 - 6921487
Alignment:
Q  23 ttgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctac 109  Q
    |||||||||||||||| ||||| ||||  |||||||| ||||||||||| || |||||||| |||||||||||||| ||||| ||||    
T  6921573 ttgaacaatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaagagctac 6921487  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 6948103 - 6948012
Alignment:
Q  23 ttgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctacgtgat 114  Q
    |||||||| ||||||| ||||| ||||  |||||||| |||| |||||| | ||||||||| |||||||||||||| ||||| |||| ||||    
T  6948103 ttgaacaacttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaagagctacatgat 6948012  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 6943183 - 6943086
Alignment:
Q  17 ttacaattgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctacgtgat 114  Q
    ||||| |||||||||| ||||| ||||| ||||  |||||||| |||||||||||  | |||||||| |||| ||||||||| ||||| |||| ||||    
T  6943183 ttacagttgaacaattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaagagctacatgat 6943086  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 6954748 - 6954661
Alignment:
Q  17 ttacaattgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaaga 104  Q
    ||||| ||||| |||||||||| ||||| ||||   || |||| ||||||||||| ||||||||||| || ||||||||||| |||||    
T  6954748 ttacagttgaaaaatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaaga 6954661  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 6935439 - 6935355
Alignment:
Q  25 gaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtgacgaagatctac 109  Q
    |||||||| ||||| ||||| ||||  |||||||| ||||||| |||  | |||||||| |||||||||||||| ||||| ||||    
T  6935439 gaacaattcgtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcgatgttgtgatgaagagctac 6935355  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 53774701 - 53774754
Alignment:
Q  25 gaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttg 78  Q
    ||||||||||||||||| |||||||  |||| ||| ||||||||||| ||||||    
T  53774701 gaacaatttgtgattatttcgcttgatttggagacagagacatatacacagttg 53774754  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 18965057 - 18964981
Alignment:
Q  22 attgaacaatttgtgattatctcgcttgtgttggggactgagacatatactcagttgttgctacctcgatgttgtga 98  Q
    ||||| ||||||||||||||||| ||||   ||||||  ||||||| ||| |||||||| || |||| |||||||||    
T  18965057 attgagcaatttgtgattatctcacttgatctggggatggagacatttacacagttgttactccctccatgttgtga 18964981  T

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