View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_high_6 (Length: 382)
Name: NF3282_high_6
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 38180719 - 38180357
Alignment:
| Q |
20 |
cacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgcta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38180719 |
cacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaaacgtctcatttctttgggcgcacaagtcacttttgcta |
38180620 |
T |
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| Q |
120 |
ccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180619 |
ccactatctacttacacactcgccttaccaacaaatcaaccatctcgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcga |
38180520 |
T |
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| Q |
220 |
aagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtcca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180519 |
aagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtcca |
38180420 |
T |
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| Q |
320 |
ttcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
382 |
Q |
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| T |
38180419 |
ttcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
38180357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 38185388 - 38185026
Alignment:
| Q |
20 |
cacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgcta |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38185388 |
cacttcctcatcatcacatacccactacacggtcacataaaccctgcactccaattcgccaagcgtctcatttctttcggcgcacaagtcacttttgcta |
38185289 |
T |
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| Q |
120 |
ccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcga |
219 |
Q |
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| |||||||||||||||||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||| ||| ||||||| || ||| ||||| |
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| T |
38185288 |
caactatctacttacacactggccttatcaacaaaccaaccatcccaggcctctccttcgccaccttctctgatggctacgacgacggtaaaaatttcga |
38185189 |
T |
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| Q |
220 |
aagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtcca |
319 |
Q |
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||||||||||||||| || ||||| || ||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38185188 |
aagcaacgaagacttcatcgcctacaggtccgagcttaagtgccactgctcagaatttctaacaaatatcatactctccggcaaacaggaaggtcgtcca |
38185089 |
T |
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| Q |
320 |
ttcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
382 |
Q |
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| T |
38185088 |
ttcacttgcttagcctacggtatcatcattccttgggtcgcaaaggtggcacgtgagcttcac |
38185026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 331
Target Start/End: Complemental strand, 38170905 - 38170594
Alignment:
| Q |
20 |
cacttcctcatcatcacatacccactacacggtcacataaaccctgctctccaattcgccaagcgtctcatttctttgggcgcacaagtcacttttgcta |
119 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38170905 |
cacttcctcatcataacatacccactacaaggtcacataaaccctgccctccaattcaccaagcgtctcatttctttgggcgcaaaagtcacttttgcta |
38170806 |
T |
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| Q |
120 |
ccactatctacttacacactcgccttaccaacaaatcaaccatcccgggcctttccttcgccaccttctctgacggccacgacgatggcccaaaattcga |
219 |
Q |
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|||||||| ||||| ||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| || | ||||| | |
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| T |
38170805 |
ccactatccacttatacagtcgccttatcaacaaaccaaccatcccgggcctctccttcgccaccttctctgacggctatgacgacggtcaaaaatcctt |
38170706 |
T |
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| Q |
220 |
aagcaacgaagactttgtcacctacgagtatgagcttaagcgccgctgctcggaatttctcacaaatatcatactctccggcaaacaggaaggtcgtcca |
319 |
Q |
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|| |||||||| | ||| ||||| || |||| ||| ||| ||| |||| |||||||||||||||||||| |||||| |||||| ||| || |||| |
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| T |
38170705 |
tggcgacgaagacatcgtctcctacatgtctgagtttacgcgtcgcggctcagaatttctcacaaatatcattctctcctccaaacaagaaaatcatcca |
38170606 |
T |
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| Q |
320 |
ttcacttgctta |
331 |
Q |
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|||||||||||| |
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| T |
38170605 |
ttcacttgctta |
38170594 |
T |
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