View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_high_8 (Length: 344)
Name: NF3282_high_8
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_high_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 59 - 344
Target Start/End: Complemental strand, 41083816 - 41083530
Alignment:
| Q |
59 |
tgaaaaggtgaatgattgccacttctatgaagaa---aatataaaaaatgcaattaccacaagagatttgcaaagccccttgataacattcacaatggtt |
155 |
Q |
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| T |
41083816 |
tgaaaaggtgaatgattgccacttctatgaagaagataatataaaaaatgcaattaccacaagagatttgcaaagccccttgataacattcacaatggtt |
41083717 |
T |
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| Q |
156 |
caaccaagaaacttataggaggaaaattcttcccctcacacacaagtatgtaacacgtaaattctattaattatcataaaatatcaattacattaatatg |
255 |
Q |
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| T |
41083716 |
caaccaagaaacttataggaggaaaattcttcccctcacacacaagtatgtaacacgtaaattctattaattatcataaaatatcaattacattaatgtg |
41083617 |
T |
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| Q |
256 |
caaaattcaatttacatgtgtggaagctaaatgttaaacataccccctataataataaaattaacttatgagcccaaattatacaatga |
344 |
Q |
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| T |
41083616 |
caaaattctatttacatgtgtggaagctaaatgttaaac--accccctataataataaaattaacttatgagcccaaattacacaatga |
41083530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41084471 - 41084415
Alignment:
| Q |
1 |
acatccacatttttaggaccgccccaatattgttggtgacttaaaacaatctttata |
57 |
Q |
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| T |
41084471 |
acatccacatttttaggaccgccccaatattgttggtgacttaaaacaaactttata |
41084415 |
T |
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