View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_low_17 (Length: 271)
Name: NF3282_low_17
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 42770295 - 42770525
Alignment:
| Q |
17 |
tctaagaacattcaagaaggttctgcgactgaaggtgaaac-tctgaggttctaggaggttctgctgaatacaacgagaatgaggagaatgatgctcttt |
115 |
Q |
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| T |
42770295 |
tctaagaacattcaagaaggttctgcgactgaaggtgaaacctctgaggttccaggaggttctgctgaatacaacgaga---------atgatgctcttt |
42770385 |
T |
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| Q |
116 |
gtgtcgatgttattataaagataacggaagatgaaaggattaaagaaaaaacttattccatttcttcgtttcaattagttgtttttaatggaatctattt |
215 |
Q |
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| T |
42770386 |
gtgtcgatgttattataaagataacggaagatgaaaggattaaagaagaaacttattccatttcttcgtttcaattagttgtttttaatggaatctattt |
42770485 |
T |
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| Q |
216 |
cttctttaatcctttgatcttctgttatctttatcataac |
255 |
Q |
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| T |
42770486 |
cttctttaatcctttgatcttctgttatctttatcataac |
42770525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 42770536 - 42770487
Alignment:
| Q |
113 |
tttgtgtcgatgttattataaagataacggaagatgaaaggattaaagaa |
162 |
Q |
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| T |
42770536 |
tttgtgtcgatgttatgataaagataacagaagatcaaaggattaaagaa |
42770487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 42770436 - 42770394
Alignment:
| Q |
213 |
tttcttctttaatcctttgatcttctgttatctttatcataac |
255 |
Q |
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| T |
42770436 |
tttcttctttaatcctttcatcttccgttatctttataataac |
42770394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 42772735 - 42772667
Alignment:
| Q |
107 |
atgctctttgtgtcgatgttattataaagataacggaagatgaaaggattaaagaaaaaacttattccattt |
178 |
Q |
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| T |
42772735 |
atgctctttgtgtagatgctatattaaagata---gaagatgaaaggattaaggaagaaactaattccattt |
42772667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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