View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3282_low_18 (Length: 263)

Name: NF3282_low_18
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3282_low_18
NF3282_low_18
[»] chr2 (30 HSPs)
chr2 (143-225)||(31584796-31584878)
chr2 (143-220)||(9087495-9087572)
chr2 (144-227)||(15803154-15803238)
chr2 (152-221)||(12941837-12941907)
chr2 (143-215)||(11522210-11522283)
chr2 (143-210)||(30523230-30523297)
chr2 (153-227)||(44954037-44954111)
chr2 (143-227)||(21834907-21834992)
chr2 (151-227)||(36870229-36870306)
chr2 (144-184)||(39913265-39913305)
chr2 (144-184)||(41100136-41100176)
chr2 (167-214)||(11949885-11949932)
chr2 (146-224)||(30072095-30072173)
chr2 (169-224)||(39181047-39181102)
chr2 (143-227)||(1364799-1364884)
chr2 (151-227)||(4003394-4003471)
chr2 (186-227)||(27987632-27987672)
chr2 (186-227)||(28074165-28074205)
chr2 (7-56)||(36870387-36870436)
chr2 (143-210)||(11515027-11515095)
chr2 (7-56)||(15803320-15803371)
chr2 (153-220)||(567360-567427)
chr2 (143-209)||(34757589-34757656)
chr2 (155-212)||(15555388-15555446)
chr2 (146-227)||(37194233-37194315)
chr2 (146-179)||(39205032-39205065)
chr2 (152-212)||(16465190-16465250)
chr2 (143-210)||(26905787-26905855)
chr2 (143-210)||(40211986-40212054)
chr2 (143-210)||(43572574-43572642)
[»] chr8 (21 HSPs)
chr8 (153-221)||(27085321-27085389)
chr8 (143-234)||(1839850-1839942)
chr8 (151-225)||(41455226-41455299)
chr8 (140-224)||(13406397-13406481)
chr8 (144-214)||(28416192-28416262)
chr8 (158-227)||(5911471-5911540)
chr8 (1-53)||(4266660-4266712)
chr8 (143-214)||(10589783-10589855)
chr8 (143-210)||(21173888-21173956)
chr8 (143-210)||(23932588-23932656)
chr8 (156-227)||(5858307-5858378)
chr8 (144-227)||(31305806-31305889)
chr8 (1-56)||(1839696-1839753)
chr8 (146-210)||(12506229-12506294)
chr8 (143-184)||(31297378-31297419)
chr8 (155-215)||(8948604-8948664)
chr8 (140-215)||(16424126-16424201)
chr8 (1-39)||(9054387-9054425)
chr8 (165-215)||(36106580-36106630)
chr8 (146-227)||(39193897-39193979)
chr8 (143-183)||(34148597-34148637)
[»] chr4 (36 HSPs)
chr4 (140-232)||(42650597-42650690)
chr4 (147-224)||(47063662-47063739)
chr4 (145-215)||(9119818-9119888)
chr4 (153-218)||(52430595-52430661)
chr4 (159-217)||(21442999-21443057)
chr4 (145-220)||(3075795-3075870)
chr4 (153-227)||(44076570-44076644)
chr4 (166-214)||(29576188-29576236)
chr4 (147-210)||(8828232-8828295)
chr4 (144-225)||(13984995-13985077)
chr4 (154-227)||(30307339-30307413)
chr4 (151-220)||(55813664-55813733)
chr4 (146-218)||(4442012-4442085)
chr4 (143-227)||(12708864-12708949)
chr4 (144-227)||(29114264-29114348)
chr4 (159-214)||(46669991-46670047)
chr4 (146-212)||(25843825-25843892)
chr4 (144-215)||(28879980-28880051)
chr4 (145-227)||(30198803-30198886)
chr4 (145-227)||(38136866-38136949)
chr4 (144-183)||(45899405-45899444)
chr4 (165-227)||(48620245-48620308)
chr4 (1-39)||(18397080-18397118)
chr4 (145-224)||(27143146-27143227)
chr4 (140-212)||(18396190-18396263)
chr4 (143-212)||(34106487-34106556)
chr4 (143-227)||(35959162-35959247)
chr4 (146-179)||(45971575-45971608)
chr4 (143-184)||(54806480-54806521)
chr4 (153-212)||(18319712-18319772)
chr4 (153-212)||(18398909-18398969)
chr4 (143-183)||(19154061-19154101)
chr4 (7-56)||(28880139-28880190)
chr4 (7-56)||(30307516-30307567)
chr4 (143-179)||(48620312-48620348)
chr4 (143-210)||(49668134-49668202)
[»] chr1 (28 HSPs)
chr1 (143-227)||(17556633-17556718)
chr1 (143-210)||(25561347-25561414)
chr1 (143-220)||(12625854-12625931)
chr1 (152-227)||(10618780-10618855)
chr1 (145-227)||(35619536-35619619)
chr1 (151-214)||(42806151-42806214)
chr1 (143-212)||(41428024-41428093)
chr1 (151-227)||(49102990-49103067)
chr1 (146-225)||(6537929-6538006)
chr1 (143-227)||(41432796-41432880)
chr1 (143-210)||(52068167-52068235)
chr1 (143-227)||(5584471-5584556)
chr1 (144-224)||(24436963-24437044)
chr1 (143-210)||(2909101-2909169)
chr1 (1-36)||(45752130-45752165)
chr1 (145-224)||(50097597-50097676)
chr1 (12-56)||(50097762-50097808)
chr1 (1-39)||(25561194-25561232)
chr1 (164-214)||(34552138-34552188)
chr1 (154-227)||(43036354-43036427)
chr1 (157-211)||(45752268-45752321)
chr1 (7-56)||(6538135-6538186)
chr1 (140-227)||(7915479-7915567)
chr1 (143-210)||(29092069-29092137)
chr1 (152-227)||(36269709-36269785)
chr1 (143-210)||(41817329-41817397)
chr1 (143-210)||(46001549-46001617)
chr1 (159-215)||(50084104-50084159)
[»] chr6 (8 HSPs)
chr6 (143-227)||(4089427-4089511)
chr6 (151-220)||(4464919-4464988)
chr6 (146-210)||(22788551-22788615)
chr6 (164-212)||(5613475-5613523)
chr6 (140-184)||(24874962-24875006)
chr6 (144-210)||(32719407-32719474)
chr6 (145-224)||(2502398-2502479)
chr6 (144-184)||(26713873-26713913)
[»] chr7 (20 HSPs)
chr7 (141-226)||(22556729-22556813)
chr7 (152-227)||(31180006-31180080)
chr7 (148-214)||(30301959-30302025)
chr7 (143-209)||(31055359-31055425)
chr7 (143-224)||(7391440-7391520)
chr7 (157-214)||(38680058-38680115)
chr7 (156-227)||(1277904-1277976)
chr7 (143-227)||(33187876-33187960)
chr7 (143-225)||(23772569-23772652)
chr7 (152-227)||(44487356-44487433)
chr7 (167-211)||(12624428-12624472)
chr7 (143-209)||(42253942-42254009)
chr7 (159-212)||(46611873-46611927)
chr7 (151-184)||(35264910-35264943)
chr7 (143-212)||(42112989-42113058)
chr7 (143-179)||(2826277-2826313)
chr7 (164-215)||(30081356-30081408)
chr7 (144-227)||(38505365-38505449)
chr7 (144-212)||(42267038-42267106)
chr7 (143-179)||(47276032-47276068)
[»] chr5 (18 HSPs)
chr5 (141-224)||(3938158-3938242)
chr5 (153-214)||(29022598-29022659)
chr5 (145-227)||(19338607-19338689)
chr5 (144-184)||(19389849-19389889)
chr5 (153-208)||(6373123-6373178)
chr5 (143-227)||(3081361-3081445)
chr5 (143-227)||(38568397-38568482)
chr5 (143-215)||(39428920-39428992)
chr5 (143-227)||(39649537-39649622)
chr5 (151-212)||(43496899-43496960)
chr5 (7-56)||(15917540-15917591)
chr5 (156-223)||(3925824-3925891)
chr5 (144-215)||(29799625-29799696)
chr5 (142-227)||(35708782-35708868)
chr5 (144-177)||(12150599-12150632)
chr5 (144-189)||(18675744-18675789)
chr5 (158-224)||(5836856-5836924)
chr5 (143-210)||(13569346-13569414)
[»] chr3 (27 HSPs)
chr3 (151-224)||(3458324-3458397)
chr3 (143-227)||(53888453-53888538)
chr3 (143-217)||(48444483-48444557)
chr3 (153-226)||(35283054-35283128)
chr3 (145-215)||(50345679-50345749)
chr3 (155-220)||(32721103-32721168)
chr3 (143-210)||(25754132-25754200)
chr3 (164-215)||(3353984-3354035)
chr3 (146-212)||(45570976-45571043)
chr3 (143-227)||(33908979-33909064)
chr3 (143-210)||(33944670-33944738)
chr3 (144-210)||(38639572-38639639)
chr3 (155-212)||(22225347-22225405)
chr3 (1-56)||(32720958-32721015)
chr3 (1-39)||(35283254-35283292)
chr3 (14-56)||(39966770-39966812)
chr3 (143-177)||(48908904-48908938)
chr3 (146-184)||(51686516-51686554)
chr3 (144-212)||(1132956-1133025)
chr3 (167-212)||(30995851-30995896)
chr3 (146-210)||(53664632-53664697)
chr3 (7-40)||(53888652-53888685)
chr3 (143-210)||(3537191-3537259)
chr3 (7-56)||(36637947-36637998)
chr3 (140-184)||(48370207-48370251)
chr3 (156-212)||(54089497-54089553)
chr3 (6-38)||(54089726-54089758)
[»] scaffold0598 (1 HSPs)
scaffold0598 (143-225)||(9435-9516)
[»] scaffold0031 (1 HSPs)
scaffold0031 (143-210)||(93536-93604)
[»] scaffold0063 (1 HSPs)
scaffold0063 (144-183)||(56567-56606)
[»] scaffold0471 (1 HSPs)
scaffold0471 (165-215)||(4698-4748)
[»] scaffold0274 (1 HSPs)
scaffold0274 (143-212)||(15899-15968)
[»] scaffold0051 (2 HSPs)
scaffold0051 (143-210)||(6787-6855)
scaffold0051 (143-210)||(7770-7838)


Alignment Details
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 31584796 - 31584878
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaag 225  Q
    |||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| ||| |||||    
T  31584796 cccaaaatcctccttcaatataattttttagttccccaaatgaggagggttttatattttgaagaaaaataagcccctcaaag 31584878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 9087495 - 9087572
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccc 220  Q
    |||||||||||||||| ||| ||||||| ||||||||||||| | || |||||||||||||||||||| |||||||||    
T  9087495 cccaaaatcctcctccgatacaatttttcagttccccaaatgaggagggttttatattttgaagaaaattaagtcccc 9087572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 15803238 - 15803154
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||||||||||||||| |||||||||||| |||||| || | || ||||||||||||||||||||||||| || ||||||||    
T  15803238 ccaaaatcctcctccaatacaattttttagttcccccaactgaggagggttttatattttgaagaaaaataagccctccaaagcc 15803154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 12941837 - 12941907
Alignment:
Q  152 ctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtccccc 221  Q
    |||||||||||||||||| ||||||||| ||||| ||||  |||||||||||||||||||||||| |||||    
T  12941837 ctcctccaatataattttctagttcccccaaatgagaaggattttatattttgaagaaaaataagcccccc 12941907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 11522210 - 11522283
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttata-ttttgaagaaaaataag 215  Q
    ||||||| |||||||||||| || |||||||||||||||||| | || |||||||| |||||||||||||||||    
T  11522210 cccaaaaccctcctccaatacaactttttagttccccaaatgaggagggttttatatttttgaagaaaaataag 11522283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 30523297 - 30523230
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||  |||| |||| |||||||||    
T  30523297 cccaaaatcctcctccaatacaattttttagttccccaaattagaaggattttgtattatgaagaaaa 30523230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 44954037 - 44954111
Alignment:
Q  153 tcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||| |||||||||||||   ||||| | || |||||||||||||||||||||||| || |||||||||    
T  44954037 tcctccaatacaattttttagttcttaaaatgaggagggttttatattttgaagaaaaataaatctcccaaagcc 44954111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 21834992 - 21834907
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| ||||||| |||| || ||||||||||||| ||||| | ||||||||||||| ||||||||||| | ||| ||||||||    
T  21834992 cccaaaaccctcctctaatacaactttttagttcccctaaatgaggagagttttatattatgaagaaaaattaatcctccaaagcc 21834907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 36870306 - 36870229
Alignment:
Q  151 cctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||||| |||||||||||| ||||||||| | || ||||| ||||||||||||||||||  || ||||||||    
T  36870306 cctcctccaatacaattttttagttcccccaaatgaggagggttttctattttgaagaaaaataatcccaccaaagcc 36870229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 39913305 - 39913265
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  39913305 ccaaaatcctcctccaatataatttttgagttccccaaatg 39913265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 41100136 - 41100176
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  41100136 ccaaaatcctcctccaatacaattttttagttccccaaatg 41100176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 11949932 - 11949885
Alignment:
Q  167 tttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||||    
T  11949932 tttttagttccccaaatgagaagagttttgtattatgaagaaaaataa 11949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 30072095 - 30072173
Alignment:
Q  146 aaaatcctcctccaatataattttttagttc-cccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    |||| |||||||||||| ||||||| ||||| |||||||| | ||  ||||||||||||||||||||||||||| |||||    
T  30072095 aaaaccctcctccaatacaattttt-agttctcccaaatgaggaggattttatattttgaagaaaaataagtcctccaaa 30072173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 39181102 - 39181047
Alignment:
Q  169 tttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    ||||||||| |||||| | |||||||||||||||||||||||||||| | ||||||    
T  39181102 tttagttcctcaaatgaggagagttttatattttgaagaaaaataagcctcccaaa 39181047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 1364884 - 1364799
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  1364884 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 1364799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 4003471 - 4003394
Alignment:
Q  151 cctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||||| ||||||| |||||||| ||||| | |||||||| |||| ||||||||||| |  |||||||||||    
T  4003471 cctcctccaatacaatttttgagttcccccaaatgaggagagttttgtattatgaagaaaaattaaccccccaaagcc 4003394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 27987672 - 27987632
Alignment:
Q  186 gaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  27987672 gaagagttttatattttgaagaaaaataag-cccccaaagcc 27987632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 28074205 - 28074165
Alignment:
Q  186 gaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  28074205 gaagagttttatattttgaagaaaaataag-cccccaaagcc 28074165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 36870436 - 36870387
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaaagtatttttgtagagagtg 56  Q
    |||| ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  36870436 gaaaattgagaaatttttcacaatttttgaaagtatttttttagagagtg 36870387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 11515095 - 11515027
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  11515095 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 11515027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 15803371 - 15803320
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  15803371 gaaaattgagaaatctttcacattttttgaaagagtatttttttagagagtg 15803320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 567427 - 567360
Alignment:
Q  153 tcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccc 220  Q
    ||||| |||| ||||||| ||||||| ||||| | ||||||||||| |||||||||||| || |||||    
T  567427 tcctctaatacaatttttgagttccctaaatgaggagagttttataatttgaagaaaaacaaatcccc 567360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 34757656 - 34757589
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaa 209  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| ||||||||    
T  34757656 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaa 34757589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 15555388 - 15555446
Alignment:
Q  155 ctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||||| |||||||||||||| ||||||| |||| ||||| |||| |||||||||||    
T  15555388 ctccaatacaattttttagttcctccaaatgagaagggttttgtattatgaagaaaaat 15555446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 37194315 - 37194233
Alignment:
Q  146 aaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  37194315 aaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 37194233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 39205065 - 39205032
Alignment:
Q  146 aaaatcctcctccaatataattttttagttcccc 179  Q
    ||||||||||||||||| ||||||||||||||||    
T  39205065 aaaatcctcctccaatacaattttttagttcccc 39205032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 16465190 - 16465250
Alignment:
Q  152 ctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||||||| |||| || |||||||||| || |||||||||| |||| || ||||||||    
T  16465190 ctcctccaatacaattattcagttccccaattgagaagagttttgtattatggagaaaaat 16465250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 26905855 - 26905787
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||  |||||||||    
T  26905855 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtatcatgaagaaaa 26905787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 40212054 - 40211986
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||| ||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  40212054 cccaaaaccctcatccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 40211986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 43572574 - 43572642
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||  ||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  43572574 cccaaaactctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 43572642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 27085389 - 27085321
Alignment:
Q  153 tcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtccccc 221  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  27085389 tcctccaatacaattttttagttccccaaatgagaagagttttatattttaaagaaaaataagtccccc 27085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 1839850 - 1839942
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagccgctcttc 234  Q
    ||||||| |||||||||||| ||||||| |||||||| ||||| | || ||||||||||||||||||||||||| || |||||||| ||||||    
T  1839850 cccaaaaccctcctccaatacaatttttaagttcccccaaatgaggagggttttatattttgaagaaaaataagccctccaaagcccctcttc 1839942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 41455299 - 41455226
Alignment:
Q  151 cctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaag 225  Q
    |||||||||||| |||||||||||| |||||||| | || ||||||||||||||||||||||||| |||||||||    
T  41455299 cctcctccaatacaattttttagtttcccaaatgaggagggttttatattttgaagaaaaataag-cccccaaag 41455226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 13406481 - 13406397
Alignment:
Q  140 cctcccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    ||||||||||  ||| ||||||  ||||||||||||||||||||| | |  ||||||||||||||||||| ||||| ||||||||    
T  13406481 cctcccaaaactctcttccaattcaattttttagttccccaaatgaggattgttttatattttgaagaaatataagccccccaaa 13406397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 28416192 - 28416262
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||||| |||| ||||||| |||||| |||||||||||||  | || ||||||||||||||||||||||||    
T  28416192 ccaaaaccctcatccaatacaattttgtagttccccaaataaggagggttttatattttgaagaaaaataa 28416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 5911471 - 5911540
Alignment:
Q  158 caatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||| ||||||||||||||||||||| | || |||||||||||| |||||||||||  ||| |||||||    
T  5911471 caatacaattttttagttccccaaatgaggagggttttatattttaaagaaaaataaacccctcaaagcc 5911540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4266660 - 4266712
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaagtatttttgtagaga 53  Q
    ||||| |||| |||||||||||||||| |||||||||||||||||| ||||||    
T  4266660 atagatgaaaattgagaaatctttcactttttttgaaagtatttttttagaga 4266712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 10589855 - 10589783
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttc-cccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||||||||||||||||||| |||||||||||||  | ||||| |||   |||||||||||||||||||||||    
T  10589855 cccaaaatcctcctccaatacaattttttagttcttctaaatgagaatgattttatattttgaagaaaaataa 10589783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 21173888 - 21173956
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  21173888 cccaaaaccctcctccaatataattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 21173956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 23932588 - 23932656
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||||||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  23932588 cccaaaatcctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 23932656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 5858307 - 5858378
Alignment:
Q  156 tccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| ||||||||   || |||||||||||||||||||||||   |||||||||||    
T  5858307 tccaatacaattttttagtttcccaaatgatgagggttttatattttgaagaaaaatataccccccaaagcc 5858378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 31305806 - 31305889
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||| |||||||| |||| ||| |||||||||||    || |||||| |||||||||||||||||| | |||||||||    
T  31305806 ccaaaatccttctccaatacaattgtttcgttccccaaattaagagggttttacattttgaagaaaaataagcctcccaaagcc 31305889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1839696 - 1839753
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    ||||| |||| ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  1839696 atagaggaaaattgagaaatctttcacattttttgaaagagtatttttttagagagtg 1839753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 12506229 - 12506294
Alignment:
Q  146 aaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||| |||||||| |||||||||||| ||||||||| | || |||| |||||||||||||||    
T  12506229 aaaatccttctccaatacaattttttagttcccccaaatgaggagggtttaatattttgaagaaaa 12506294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 31297378 - 31297419
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  31297378 cccaaaaccctcctccaatacaattttttagttccccaaatg 31297419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 8948664 - 8948604
Alignment:
Q  155 ctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    |||||||| ||||||||||||||| |||||   || |||||| ||||||||||||||||||    
T  8948664 ctccaatacaattttttagttcccaaaatgacgagggttttacattttgaagaaaaataag 8948604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 16424201 - 16424126
Alignment:
Q  140 cctcccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    |||| ||||||||||||| |||| |||||||||||||| | ||||  ||  ||||  |||||||||||||||||||    
T  16424201 cctctcaaaatcctcctctaatacaattttttagttcctcgaatgataatggtttcttattttgaagaaaaataag 16424126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9054387 - 9054425
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  9054387 atagaggaaaattgagaaatctttcacattttttgaaag 9054425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 36106580 - 36106630
Alignment:
Q  165 attttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    |||||||||||||| | | | | ||||||||||||||||||||||||||||    
T  36106580 attttttagttccctatacgaggagagttttatattttgaagaaaaataag 36106630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 39193979 - 39193897
Alignment:
Q  146 aaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||| |||||||||||| || ||||||||| |||||||||   || |||||||||| ||||||||||| |  |||||||||||    
T  39193979 aaaaccctcctccaatacaactttttagttcccccaaatgaagagggttttatattatgaagaaaaattaaccccccaaagcc 39193897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 34148597 - 34148637
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaat 183  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  34148597 cccaaaaacctcctccaatataatttttgagttccctaaat 34148637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 42650690 - 42650597
Alignment:
Q  140 cctcccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagccgctct 232  Q
    |||||||||| |||||||||||| |||||||||||||||| ||||| | || ||||||||||||||||||||||||  ||||||||||| ||||    
T  42650690 cctcccaaaaccctcctccaatacaattttttagttcccccaaatgaggagggttttatattttgaagaaaaataaaacccccaaagcccctct 42650597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 47063739 - 47063662
Alignment:
Q  147 aaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    |||||||| ||||||| ||||||||||||||||||||| | || |||||||||||| |||||||||||| ||||||||    
T  47063739 aaatcctcttccaatacaattttttagttccccaaatgaggagggttttatattttaaagaaaaataagccccccaaa 47063662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 9119818 - 9119888
Alignment:
Q  145 caaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    ||||| |||||||||||| ||| |||||||| |||||||| | ||||||||||||||||||||||||||||    
T  9119818 caaaaccctcctccaatacaatattttagtttcccaaatgaggagagttttatattttgaagaaaaataag 9119888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 52430595 - 52430661
Alignment:
Q  153 tcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcc 218  Q
    ||||||||||||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||    
T  52430595 tcctccaatataattttttagtttccctaaatgaggagagttttatattttgaagaaaaataagtcc 52430661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 21443057 - 21442999
Alignment:
Q  159 aatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtc 217  Q
    ||||||||||||||||||| |||||| | || |||||||||||||||||||||||||||    
T  21443057 aatataattttttagttcctcaaatgaggagggttttatattttgaagaaaaataagtc 21442999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 3075795 - 3075870
Alignment:
Q  145 caaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccc 220  Q
    ||||| ||||||||||||| ||||||||||| | ||||||   || ||||||||| ||||||||||||||||||||    
T  3075795 caaaaccctcctccaatattattttttagtttcgcaaatgaagagggttttatatcttgaagaaaaataagtcccc 3075870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 44076644 - 44076570
Alignment:
Q  153 tcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||| |||| ||||||||||||||| || || |||||||||| |||| ||||||||||| | ||||||||||||    
T  44076644 tcctcaaatacaattttttagttccctaagtgagaagagttttgtattatgaagaaaaattaatcccccaaagcc 44076570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 29576188 - 29576236
Alignment:
Q  166 ttttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    ||||||||||||||||||| | || ||||||||||||||||||||||||    
T  29576188 ttttttagttccccaaatgaggagcgttttatattttgaagaaaaataa 29576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 8828232 - 8828295
Alignment:
Q  147 aaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||||||||| |||||||||| |||||| |||||| | |||||||| |||| |||||||||    
T  8828232 aaatcctcctccattataatttttcagttcctcaaatgaggagagttttgtattatgaagaaaa 8828295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 13984995 - 13985077
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaag 225  Q
    |||||| |||||||||||| |||||||||||||| | |||||   || |||||||||||| |||||||||||| || ||||||    
T  13984995 ccaaaaccctcctccaatacaattttttagttccactaaatgaagagggttttatattttaaagaaaaataagccctccaaag 13985077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 30307413 - 30307339
Alignment:
Q  154 cctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||| |||| |||||||||||||||| ||||| | ||  ||||||||||||||||||| |||||||| |||||||    
T  30307413 cctcaaatacaattttttagttcccccaaatgaggaggattttatattttgaagaaaagtaagtccctcaaagcc 30307339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 55813664 - 55813733
Alignment:
Q  151 cctcctccaatataattttttagttccccaaatgtg-aagagttttatattttgaagaaaaataagtcccc 220  Q
    |||| ||||||| |||||||||||| |||||||| | |||| |||||||||||||||||||||||| ||||    
T  55813664 cctcttccaatacaattttttagtttcccaaatgaggaaga-ttttatattttgaagaaaaataagccccc 55813733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 4442012 - 4442085
Alignment:
Q  146 aaaatcctcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaataagtcc 218  Q
    |||| |||| ||||||| |||||| ||| |||| |||||| | || ||||||||||||||||||||||||||||    
T  4442012 aaaaccctcttccaatacaattttgtagctccctcaaatgaggagggttttatattttgaagaaaaataagtcc 4442085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 12708864 - 12708949
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  12708864 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 12708949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 29114264 - 29114348
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  29114264 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 29114348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 46669991 - 46670047
Alignment:
Q  159 aatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||| ||||||||||||||| |||||| | || ||||||||||||||||||||||||    
T  46669991 aatacaattttttagttccctcaaatgaggagggttttatattttgaagaaaaataa 46670047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 25843892 - 25843825
Alignment:
Q  146 aaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||||||||||||| | ||||| |||| ||||||||| |||||||||| |||| ||| |||||||    
T  25843892 aaaatcctcctccaatacactttttgagtttccccaaatgagaagagttttgtattatgatgaaaaat 25843825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 28880051 - 28879980
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    ||||||||||| | ||||| ||| ||||||||   || ||| | ||||||||||||||||||||||||||||    
T  28880051 ccaaaatcctcattcaatacaatattttagttattcatatgaggagagttttatattttgaagaaaaataag 28879980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 30198803 - 30198886
Alignment:
Q  145 caaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  30198803 caaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 30198886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 38136866 - 38136949
Alignment:
Q  145 caaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||| |||||||||||| |||||||||||||| ||||||| |||| ||||| |||| |||| |||| | |  |||||||||||    
T  38136866 caaaaccctcctccaatacaattttttagttcctccaaatgagaagggttttgtattatgaaaaaaagttaaccccccaaagcc 38136949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 45899444 - 45899405
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaat 183  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  45899444 ccaaaaccctcctccaatacaattttttagttccccaaat 45899405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 48620308 - 48620245
Alignment:
Q  165 attttttagttccccaa-atgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||||||||||| | ||| | || |||||||||||||||| |||||||| |||||||||||    
T  48620308 attttttagttcccccagatgaggagggttttatattttgaagtaaaataagccccccaaagcc 48620245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18397118 - 18397080
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  18397118 atagaggaaaattgagaaatctttcacattttttgaaag 18397080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 27143227 - 27143146
Alignment:
Q  145 caaaatcctcctccaatataattttttagt--tccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    |||||||||| ||||||| |||||||||||  ||| ||||||   ||||||||||||| | |||||||||||  ||||||||    
T  27143227 caaaatcctcatccaatacaattttttagttctccacaaatgaagagagttttatattataaagaaaaataaaccccccaaa 27143146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 18396263 - 18396190
Alignment:
Q  140 cctcccaaaatcctcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||| ||||| ||||||||||||   ||||||||||||  |||||| | || ||||||||||||||||||||||    
T  18396263 cctctcaaaaccctcctccaatactgttttttagttccatcaaatggggagggttttatattttgaagaaaaat 18396190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 34106556 - 34106487
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||||| || | ||||||||||||| |||| ||||||||   | ||||||||||| |||||||||||    
T  34106556 cccaaaatcttctttcaatataatttttgagtttcccaaatgaataaagttttatattgtgaagaaaaat 34106487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 35959247 - 35959162
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||  ||||||||||| || ||||||||| ||||||||| | || ||||| |||| ||||||||||| |  |||||||||||    
T  35959247 cccaaaacgctcctccaatacaactttttagttcccccaaatgaggagggttttgtattatgaagaaaaattaaacccccaaagcc 35959162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 45971608 - 45971575
Alignment:
Q  146 aaaatcctcctccaatataattttttagttcccc 179  Q
    ||||||||||||||||| ||||||||||||||||    
T  45971608 aaaatcctcctccaatacaattttttagttcccc 45971575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 54806521 - 54806480
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    ||||||| ||||| |||||||||||||| |||||||||||||    
T  54806521 cccaaaaccctcccccaatataatttttgagttccccaaatg 54806480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 18319712 - 18319772
Alignment:
Q  153 tcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||||||| | ||||||||||||  |||||| | || ||||||||||||||||||||||    
T  18319712 tcctccaatacagttttttagttccatcaaatggggagggttttatattttgaagaaaaat 18319772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 18398969 - 18398909
Alignment:
Q  153 tcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||||||| | ||||||||||||  |||||| | || ||||||||||||||||||||||    
T  18398969 tcctccaatacagttttttagttccatcaaatggggagggttttatattttgaagaaaaat 18398909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 19154101 - 19154061
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaat 183  Q
    ||||||| | |||||||||||| ||||||||||||||||||    
T  19154101 cccaaaaccttcctccaatatagttttttagttccccaaat 19154061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 28880190 - 28880139
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||| ||||||||||||  ||||||||| |||||||||    
T  28880190 gaaaattgagaaatcttttacattttttgaaagagtatttttttagagagtg 28880139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 30307567 - 30307516
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||||||||||| ||  ||||||||| |||||||||    
T  30307567 gaaaattgagaaatctttcacatttttttaatgagtatttttttagagagtg 30307516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 48620348 - 48620312
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcccc 179  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  48620348 cccaaaaccctcctccaatacaattttttagttcccc 48620312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 49668134 - 49668202
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||||  ||||| | || |||| ||||| |||||||||    
T  49668134 cccaaaaccctcctccaatacaattttttagttcccttaaatgaggagggtttaatattatgaagaaaa 49668202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 17556718 - 17556633
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| |||||||||||||||| ||||| | || ||||||||||||||||||||||||| |||||||||||    
T  17556718 cccaaaaccctcctccaatagaattttttagttcccccaaatgaggagggttttatattttgaagaaaaataagccccccaaagcc 17556633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 25561347 - 25561414
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||   |  ||||||||||||||||||||    
T  25561347 cccaaaaccctcctccaatataattttttagttccccaaatgacgatggttttatattttgaagaaaa 25561414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 12625854 - 12625931
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccc 220  Q
    |||||||  ||||||||||| || |||||||||| ||||||| | ||| |||||||||||||||||||||||| ||||    
T  12625854 cccaaaactctcctccaatacaagtttttagttctccaaatgaggagatttttatattttgaagaaaaataagccccc 12625931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 10618855 - 10618780
Alignment:
Q  152 ctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||| || |||||||||||||||   ||| | |||||||||||||||||||||||| || ||||||||||||    
T  10618855 ctcctccattacaattttttagttccctccatgaggagagttttatattttgaagaaaaacaaatcccccaaagcc 10618780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 35619536 - 35619619
Alignment:
Q  145 caaaatcctcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||| |||| ||||||| ||||||||||||||| || |||   |||||||||||||||||||||||||||| | |||||||||    
T  35619536 caaaaccctcatccaatacaattttttagttccctcagatgattagagttttatattttgaagaaaaataagcctcccaaagcc 35619619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 42806214 - 42806151
Alignment:
Q  151 cctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||| ||||||| ||||||||||| ||| ||||| |||| ||||||||||||||||||||||||    
T  42806214 cctcttccaatacaattttttagtccccaaaatgagaagggttttatattttgaagaaaaataa 42806151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 41428024 - 41428093
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||| | ||  ||| |||||||||||    
T  41428024 cccaaaatcctcctccaatataatttttgagttccccaaatgaggagattctttcattatgaagaaaaat 41428093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 49102990 - 49103067
Alignment:
Q  151 cctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||||| |||||||||||| ||||||||| | || ||||||| ||||||||||||||||  || ||||||||    
T  49102990 cctcctccaatacaattttttagttcccccaaatgaggagggttttatgttttgaagaaaaataaaccctccaaagcc 49103067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 6538006 - 6537929
Alignment:
Q  146 aaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaag 225  Q
    ||||||||||||||||| | ||||||| ||| ||||| | | |||||||||||||||||||  ||||||| |||||||||    
T  6538006 aaaatcctcctccaatacatttttttaattctccaaacgaggagagttttatattttgaag--aaataagccccccaaag 6537929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 41432796 - 41432880
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| || |||| ||| ||||||||| | || |||||||||| ||||||||||| |  |||||||||||    
T  41432796 cccaaaaccctcctccaatacaaattttgagtcccccaaatgaggagggttttatattatgaagaaaaatgaaacccccaaagcc 41432880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 52068167 - 52068235
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | |||||||| |||| |||||||||    
T  52068167 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagagttttgtattatgaagaaaa 52068235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 5584556 - 5584471
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  5584556 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 5584471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 24436963 - 24437044
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    |||||| ||||||| |||| |||||||||  ||||| ||||| | || ||||||||||||||||||||||||| || |||||    
T  24436963 ccaaaaccctcctctaatacaattttttaactcccccaaatgaggagggttttatattttgaagaaaaataagcccaccaaa 24437044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 2909169 - 2909101
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  2909169 cccaaaaccctcctccaatacaattttttagttcctccaaatgagtagggttttctattatgaagaaaa 2909101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45752130 - 45752165
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttga 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  45752130 atagaagaaaattgagaaatctttcacattttttga 45752165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 50097676 - 50097597
Alignment:
Q  145 caaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    ||||| |||| ||||||| || ||||||||||| |||||  | |  ||||||||||||||||||||||||  ||||||||    
T  50097676 caaaaacctcatccaatacaactttttagttcctcaaataaggatggttttatattttgaagaaaaataaaccccccaaa 50097597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 50097808 - 50097762
Alignment:
Q  12 ttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  50097808 ttgagaaatctttcacattttttgaaagagtatttttttagagagtg 50097762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25561194 - 25561232
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  25561194 atagaggaaaattgagaaatctttcacattttttgaaag 25561232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 34552138 - 34552188
Alignment:
Q  164 aattttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||||||||||||| |||||| | || |||||||||||| |||||||||||    
T  34552138 aattttttagttcctcaaatgaggagggttttatattttaaagaaaaataa 34552188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 43036354 - 43036427
Alignment:
Q  154 cctccaatataattttttagttc-cccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||||| ||||||||||||| |||||||| | || |||||||| ||||||||||||| |  |||||||||||    
T  43036354 cctccaatacaattttttagttctcccaaatgaggagggttttata-tttgaagaaaaattaaccccccaaagcc 43036427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 45752268 - 45752321
Alignment:
Q  157 ccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaa 211  Q
    |||||| ||||||||||||||||||  | |||| |||||||||||||||||||||    
T  45752268 ccaatacaattttttagttccccaatggagaag-gttttatattttgaagaaaaa 45752321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 6538186 - 6538135
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  6538186 gaaaattgagaaatctttcatattttttgaaagagtatttttttagagagtg 6538135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 7915567 - 7915479
Alignment:
Q  140 cctcccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||| |||||||||||| ||||||| | | |||| ||||| | || ||| |||||| ||||||||||| |  |||||||||||    
T  7915567 cctcccaaaaccctcctccaatacaatttttgaatcccccaaaatgaggagggttctatattatgaagaaaaatgaaccccccaaagcc 7915479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 29092137 - 29092069
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||  ||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  29092137 cccaaaactctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 29092069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 36269785 - 36269709
Alignment:
Q  152 ctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||||||| |||||||||||| ||||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  36269785 ctcctccaatacaattttttagttcccccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 36269709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 41817329 - 41817397
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||| |||||||   || ||||| |||| |||||||||    
T  41817329 cccaaaaccctcctccaatacaattttttagttcctccaaatgatgagggttttgtattatgaagaaaa 41817397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 46001617 - 46001549
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||  |||||| |||| |||||||||||||| ||||||| | || |||||||||| |||||||||    
T  46001617 cccaaaactctcctcaaatacaattttttagttcctccaaatgaggagggttttatattatgaagaaaa 46001549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 50084159 - 50084104
Alignment:
Q  159 aatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    |||| |||||||||||||||||||||   || |||||||||||| ||||||||||||    
T  50084159 aatacaattttttagttccccaaatgacgagggttttatatttt-aagaaaaataag 50084104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 4089427 - 4089511
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||||||| |||||||| ||||| |||||||| |||||| | |||||||||||||||||||||||||||| |||| ||||||    
T  4089427 cccaaaatccttctccaatacaatttcttagttcctcaaatgaggagagttttatattttgaagaaaaataagcccccgaaagcc 4089511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 4464988 - 4464919
Alignment:
Q  151 cctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccc 220  Q
    |||||||||||| ||||||||||||||||||||| | |  ||| ||||||||||||||||||||| ||||    
T  4464988 cctcctccaatacaattttttagttccccaaatgaggaaggttgtatattttgaagaaaaataagccccc 4464919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 22788551 - 22788615
Alignment:
Q  146 aaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||| |||||||||||| |||||||||||||| |||||| |||||||||| |||| | |||||||    
T  22788551 aaaaccctcctccaatacaattttttagttcctcaaatgagaagagttttgtattatcaagaaaa 22788615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 5613523 - 5613475
Alignment:
Q  164 aattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||||| |||||||||||| | || ||||||||||||||||||||||    
T  5613523 aatttttttgttccccaaatgaggagggttttatattttgaagaaaaat 5613475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 24874962 - 24875006
Alignment:
Q  140 cctcccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||    
T  24874962 cctcccaaaaccctcctccaatacaatgttttagttccccaaatg 24875006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 32719407 - 32719474
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  32719407 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 32719474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 2502398 - 2502479
Alignment:
Q  145 caaaatcctcctccaatataattttttagt--tccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    |||||||||| ||||||| |||||||||||  ||| ||||||   ||||||||||||| | |||||||||||  ||||||||    
T  2502398 caaaatcctcatccaatacaattttttagttctccacaaatgaagagagttttatattataaagaaaaataaaccccccaaa 2502479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 26713913 - 26713873
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    |||||| |||||||||||| ||||||| |||||||||||||    
T  26713913 ccaaaaccctcctccaatacaatttttgagttccccaaatg 26713873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 22556729 - 22556813
Alignment:
Q  141 ctcccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagc 226  Q
    |||||||||||||||| ||||| ||||||   |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  22556729 ctcccaaaatcctccttcaatacaattttaaggttccccaaatgagaagagttttatattttgaagaaatataag-cccccaaagc 22556813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 31180006 - 31180080
Alignment:
Q  152 ctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||||||| ||||||||||| || |||||| | |||||||||||||||||||||||||||| |||||||||||    
T  31180006 ctcctccaatacaattttttagt-cctcaaatgaggagagttttatattttgaagaaaaataagacccccaaagcc 31180080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 30301959 - 30302025
Alignment:
Q  148 aatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    ||||||||||||||| |||||||||||| | |||||| | |||||||||||||||||||||||||||    
T  30301959 aatcctcctccaatacaattttttagtttctcaaatgaggagagttttatattttgaagaaaaataa 30302025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 31055425 - 31055359
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaa 209  Q
    ||||||| |||||||||||| ||||||||||||||||||||| | || |||||||||||| ||||||    
T  31055425 cccaaaaccctcctccaatacaattttttagttccccaaatgaggagggttttatattttaaagaaa 31055359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 7391440 - 7391520
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    ||||||| |||| ||||||| | ||||||||||||||||||  | || ||||||||||||||||||||||||| ||||||||    
T  7391440 cccaaaaccctcatccaataca-ttttttagttccccaaataaggagggttttatattttgaagaaaaataagccccccaaa 7391520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 38680058 - 38680115
Alignment:
Q  157 ccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||||| |||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  38680058 ccaatacaattatttagttccccaaataggaagagttttatattttgaagaaaaataa 38680115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 1277976 - 1277904
Alignment:
Q  156 tccaatataattttttagttccccaaa-tgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| ||||||||||||||||||| || | |  ||||||||||||||||||||||||| |||||||||||    
T  1277976 tccaatacaattttttagttccccaaaatgaggatggttttatattttgaagaaaaataagccccccaaagcc 1277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 33187876 - 33187960
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||  ||||||||||| |||||||||||||| |||||| | |   |||||||||||||||||||| ||| |||||||||||    
T  33187876 cccaaaactctcctccaatacaattttttagttcctcaaatgaggatgattttatattttgaagaaaaacaagccccccaaagcc 33187960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 23772569 - 23772652
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttc-cccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaag 225  Q
    |||||||||||||   |||||||||||||| ||  |||||||| | ||| |||||||||||||||||||||||||| |||||||    
T  23772569 cccaaaatcctcccttaatataattttttaattttcccaaatgaggagatttttatattttgaagaaaaataagtctcccaaag 23772652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 44487356 - 44487433
Alignment:
Q  152 ctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaat-aagtcccccaaagcc 227  Q
    ||||||||||| |||||||||||||| | ||||| | ||| ||||||||||||||||||| | || ||||||||||||    
T  44487356 ctcctccaatacaattttttagttcctctaaatgaggagaattttatattttgaagaaaagtaaactcccccaaagcc 44487433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 12624428 - 12624472
Alignment:
Q  167 tttttagttccccaaatgtgaagagttttatattttgaagaaaaa 211  Q
    |||||||||||||||||  |||||||||| |||||||||||||||    
T  12624428 tttttagttccccaaataagaagagttttttattttgaagaaaaa 12624472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 42254009 - 42253942
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaa 209  Q
    ||||||| |||||| |||||||||||||||||||| ||||||| | || ||||| |||| ||||||||    
T  42254009 cccaaaaccctccttcaatataattttttagttcctccaaatgaggagggttttgtattatgaagaaa 42253942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 46611873 - 46611927
Alignment:
Q  159 aatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||| ||||||||||||||| |||||| | || ||||||||||||||||||||||    
T  46611873 aatacaattttttagttccctcaaatggggagggttttatattttgaagaaaaat 46611927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 35264910 - 35264943
Alignment:
Q  151 cctcctccaatataattttttagttccccaaatg 184  Q
    |||||||||||| |||||||||||||||||||||    
T  35264910 cctcctccaatacaattttttagttccccaaatg 35264943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 42112989 - 42113058
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||| |||  ||||||| || |||||||||||||||||| | |||||||  |||| |||||||||||    
T  42112989 cccaaaaccctattccaatacaactttttagttccccaaatgaggagagtttagtattatgaagaaaaat 42113058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 2826277 - 2826313
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcccc 179  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  2826277 cccaaaaccctcctccaatacaattttttagttcccc 2826313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 30081408 - 30081356
Alignment:
Q  164 aattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    |||||||||||||| |||| || |||| ||||| |||||||||||||||||||    
T  30081408 aattttttagttcctccaagtgagaagggttttttattttgaagaaaaataag 30081356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 38505365 - 38505449
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||| |||||||||||| |||||| ||||| ||||||||| | || ||||| |||| ||||||||| | |  |||||||||||    
T  38505365 ccaaaaccctcctccaatacaattttatagttcccccaaatgaggagggttttgtattatgaagaaaagttaaccccccaaagcc 38505449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 42267038 - 42267106
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||| | |||||||||| ||||||| | ||| |||||||  ||||||||| |||| |||||||||||    
T  42267038 ccaaaaccttcctccaatacaatttttgaattctccaaatgataagagttttgtattatgaagaaaaat 42267106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 47276032 - 47276068
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcccc 179  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  47276032 cccaaaatcctcccccaatataatttttgagttcccc 47276068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 3938158 - 3938242
Alignment:
Q  141 ctcccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||| | || ||||||||||| ||||||||||||| ||||||||    
T  3938158 ctcccaaaatcctactccaatacaattttttagttccccaaaatgagcagggttttatatttcgaagaaaaataagccccccaaa 3938242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 29022659 - 29022598
Alignment:
Q  153 tcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataa 214  Q
    |||||||||| ||||||||||||||  ||||| | |||||||||||||||||||||||||||    
T  29022659 tcctccaatacaattttttagttccttaaatgaggagagttttatattttgaagaaaaataa 29022598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 19338607 - 19338689
Alignment:
Q  145 caaaatcctcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||||| ||||| ||||||||||||||| ||||    ||| |||||||||||||||||||||||| ||||||||||||    
T  19338607 caaaatcctccttcaatacaattttttagttccctcaaaccataagggttttatattttgaagaaaaataa-tcccccaaagcc 19338689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 19389849 - 19389889
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  19389849 ccaaaatcctcctccaatacaattttttagttccccaaatg 19389889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 6373178 - 6373123
Alignment:
Q  153 tcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaa 208  Q
    ||||| |||| ||||||||||||||||||||| | || ||||||||||||||||||    
T  6373178 tcctcgaatacaattttttagttccccaaatgaggagggttttatattttgaagaa 6373123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 3081361 - 3081445
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttc-cccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||  ||| |||||||||||||||||||||   |||||| | || ||||||||| ||||||||||||||| |||||||||||    
T  3081361 cccaaaactctcatccaatataattttttagttctatcaaatgaggagggttttatatattgaagaaaaataag-cccccaaagcc 3081445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 38568397 - 38568482
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| ||||||||||||||||||||||||| ||||||||| | || ||||  |||| ||||||||| | |  |||||||||||    
T  38568397 cccaaaaccctcctccaatataattttttagttcccccaaatgaggagggtttagtattatgaagaaaagttaaccccccaaagcc 38568482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 39428992 - 39428920
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatg-tgaagagttttatattttgaagaaaaataag 215  Q
    ||||||| ||||||| |||| |||||||||||||| ||||||  ||||| |||||||||||||||| |||||||    
T  39428992 cccaaaaccctcctctaatacaattttttagttcctcaaatgaggaaga-ttttatattttgaagataaataag 39428920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 39649622 - 39649537
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||||||||||||||| |||||||||||||| ||||||| | || ||||| |||  ||||||||| | |  |||||||||||    
T  39649622 cccaaaatcctcctccaatacaattttttagttcctccaaatgaggagggttttgtatcatgaagaaaagttaaccccccaaagcc 39649537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 43496899 - 43496960
Alignment:
Q  151 cctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||||||||| ||||||| ||||||||||||| | |||||||| |||| | |||||||||    
T  43496899 cctcctccaatacaatttttaagttccccaaatgagcagagttttgtattattaagaaaaat 43496960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 15917591 - 15917540
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||| ||||||||||  |||||||||||||||||||    
T  15917591 gaaatttgagaaatctttcatattttttgaaagagtatttttgtagagagtg 15917540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 3925824 - 3925891
Alignment:
Q  156 tccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaa 223  Q
    ||||||| ||||||||||||||||||||| | ||| || |||||  ||||||||||| | ||||||||    
T  3925824 tccaatacaattttttagttccccaaatgaggagaattctatatcatgaagaaaaattaatcccccaa 3925891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 29799696 - 29799625
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    |||||| |||| ||||||| | ||||||||||||||| ||    || |||||||||||||||||||||||||    
T  29799696 ccaaaaccctcatccaatacagttttttagttccccacataaagagggttttatattttgaagaaaaataag 29799625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 35708782 - 35708868
Alignment:
Q  142 tcccaaaatcctcctccaatataattttttagttccc-caaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    |||||||| ||||||||| || ||||||||||||||| |||||| | ||  ||||||| ||||||||||||  |  |||||||||||    
T  35708782 tcccaaaaccctcctccagtacaattttttagttccctcaaatgaggaggattttatactttgaagaaaaactaaccccccaaagcc 35708868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 12150632 - 12150599
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttcc 177  Q
    ||||||||||||||||||| ||||||||||||||    
T  12150632 ccaaaatcctcctccaatacaattttttagttcc 12150599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 18675744 - 18675789
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaatgtgaag 189  Q
    |||||| ||| |||||||||||| ||||||||||||||||| ||||    
T  18675744 ccaaaacccttctccaatataatcttttagttccccaaatgagaag 18675789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 5836924 - 5836856
Alignment:
Q  158 caatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaat-aagtcccccaaa 224  Q
    ||||| ||||||| |||||||| ||||| |||||||||| |||| ||||||||||| || |||||||||    
T  5836924 caatacaatttttaagttcccccaaatgagaagagttttgtattatgaagaaaaatgaactcccccaaa 5836856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 13569414 - 13569346
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||| | | | |||| |||| |||||||||    
T  13569414 cccaaaaccctcctccaatataattttgtagttcctccaaatgaggaaaattttgtattatgaagaaaa 13569346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 3458324 - 3458397
Alignment:
Q  151 cctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaa 224  Q
    |||||||||||| ||||||||||||||||||| | | |  ||||||||||||||||||||||||||| ||||||    
T  3458324 cctcctccaatacaattttttagttccccaaacgaggacggttttatattttgaagaaaaataagtctcccaaa 3458397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 53888538 - 53888453
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| |||||||||||||||| |||   | || ||||||||||||||||||||||||| |||||||||||    
T  53888538 cccaaaaccctcctccaatacaattttttagttcccccaaacaaggagggttttatattttgaagaaaaataagccccccaaagcc 53888453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 48444557 - 48444483
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtc 217  Q
    ||||||| |||| ||||||| |||||||||| |||||||||| | |  |||||||||||||||||||||||||||    
T  48444557 cccaaaaccctcatccaatacaattttttagatccccaaatgaggaaggttttatattttgaagaaaaataagtc 48444483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 35283128 - 35283054
Alignment:
Q  153 tcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaataagtcccccaaagc 226  Q
    |||||||||| |||||||||||||||| ||||| | || |||||||||||||||||||||| |  ||||||||||    
T  35283128 tcctccaatacaattttttagttcccccaaatgaggagggttttatattttgaagaaaaattaaccccccaaagc 35283054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 50345679 - 50345749
Alignment:
Q  145 caaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    ||||| |||| ||||||| |||| |||||||||||||| | | || |||||||||||||||||||||||||    
T  50345679 caaaaccctcatccaatacaattctttagttccccaaacgaggagtgttttatattttgaagaaaaataag 50345749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 32721103 - 32721168
Alignment:
Q  155 ctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccc 220  Q
    |||||||  ||||||| |||| ||||||||   |||||||||||||||||||||||||||||||||    
T  32721103 ctccaatgcaatttttgagtttcccaaatgaagagagttttatattttgaagaaaaataagtcccc 32721168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 25754132 - 25754200
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||||||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  25754132 cccaaaatcctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 25754200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 3354035 - 3353984
Alignment:
Q  164 aattttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    ||||||||| ||||||||| | | ||||||||||||||||||||||||||||    
T  3354035 aattttttaattccccaaacgaggagagttttatattttgaagaaaaataag 3353984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 45570976 - 45571043
Alignment:
Q  146 aaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||||||||||||| |||||||||||| ||||||||| | || |||| ||||| |||||||||||    
T  45570976 aaaatcctcctccaatacaattttttagttcccccaaatgaggagggtttaatattatgaagaaaaat 45571043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 33908979 - 33909064
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaagcc 227  Q
    ||||||| |||||||||||| || ||||||||| ||||||||| | || ||||| |||| ||||||||| | | ||||||||||||    
T  33908979 cccaaaaccctcctccaatacaactttttagtttccccaaatgaggagggttttgtattatgaagaaaagttaatcccccaaagcc 33909064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 33944670 - 33944738
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  33944670 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 33944738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 38639639 - 38639572
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  38639639 ccaaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 38639572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 22225405 - 22225347
Alignment:
Q  155 ctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||||||||||||||||||||| ||||| | |||||||  |||| |||||||||||    
T  22225405 ctccaatataattttttagttcccctaaatgaggagagtttagtattatgaagaaaaat 22225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32720958 - 32721015
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    ||||| |||| ||| |||||||||||||||| |||||  |||||||||||||||||||    
T  32720958 atagaggaaaattgtgaaatctttcacatttattgaaagagtatttttgtagagagtg 32721015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35283292 - 35283254
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  35283292 ataggagaaaattgagaaatctttcacattttttgaaag 35283254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 39966770 - 39966812
Alignment:
Q  14 gagaaatctttcacattttttgaaagtatttttgtagagagtg 56  Q
    ||||||| |||||||||||||||||||| |||| |||||||||    
T  39966770 gagaaatttttcacattttttgaaagtaattttttagagagtg 39966812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 48908904 - 48908938
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc 177  Q
    ||||||| |||||||||||||||||||||||||||    
T  48908904 cccaaaaccctcctccaatataattttttagttcc 48908938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 51686554 - 51686516
Alignment:
Q  146 aaaatcctcctccaatataattttttagttccccaaatg 184  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  51686554 aaaaccctcctccaatacaattttttagttccccaaatg 51686516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 1132956 - 1133025
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttcccc-aaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||| |||||||||||| ||||||| |||||||| ||||| | |||||||| |||| ||||| |||||    
T  1132956 ccaaaaccctcctccaatacaatttttgagttccccaaaatgaggagagttttgtattatgaagtaaaat 1133025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 30995896 - 30995851
Alignment:
Q  167 tttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    |||||||||||||||||| | |||||||| |||| |||||||||||    
T  30995896 tttttagttccccaaatgagtagagttttgtattatgaagaaaaat 30995851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 53664632 - 53664697
Alignment:
Q  146 aaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||| |||||||||||| |||||||||||||| ||||||| | || ||||| |||| |||||||||    
T  53664632 aaaaccctcctccaatacaattttttagttcctccaaatgaggagggttttgtattatgaagaaaa 53664697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 53888685 - 53888652
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaaagt 40  Q
    |||| |||||||||||||||||||||||||||||    
T  53888685 gaaaattgagaaatctttcacattttttgaaagt 53888652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 3537259 - 3537191
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagtt-ccccaaatgtgaagagttttatattttgaagaaaa 210  Q
    |||||||  ||||||||||| |||||||||||| ||||||||| | || ||||| |||| |||||||||    
T  3537259 cccaaaactctcctccaatacaattttttagttcccccaaatgaggagggttttgtattatgaagaaaa 3537191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 36637998 - 36637947
Alignment:
Q  7 gaaagttgagaaatctttcacattttttg--aaagtatttttgtagagagtg 56  Q
    |||| ||||||||||||||||||||||||  ||||||||| | |||||||||    
T  36637998 gaaaattgagaaatctttcacattttttgaaaaagtatttatttagagagtg 36637947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 48370207 - 48370251
Alignment:
Q  140 cctcccaaaatcctcctccaatataattttttagttccccaaatg 184  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||    
T  48370207 cctcccaaaatccttctccgatacaatttttgagttccccaaatg 48370251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 54089497 - 54089553
Alignment:
Q  156 tccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||| |||||||||||| | |||||| |||||||||| |||| | |||||||||    
T  54089497 tccaatacaattttttagtttctcaaatgagaagagttttgtattataaagaaaaat 54089553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 54089726 - 54089758
Alignment:
Q  6 agaaagttgagaaatctttcacattttttgaaa 38  Q
    ||||| |||||||||||||||||||||||||||    
T  54089726 agaaaattgagaaatctttcacattttttgaaa 54089758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 9435 - 9516
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaataagtcccccaaag 225  Q
    ||||||| ||||||||| || ||||||||||||||||||||| |||    |||||||||| |||||||||||| |||||||||    
T  9435 cccaaaaccctcctccagtacaattttttagttccccaaatgagaatgactttatatttt-aagaaaaataagccccccaaag 9516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 93536 - 93604
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| |||||||||||||| ||||||| | |||||||| |||| |||||||||    
T  93536 cccaaaaccctcctccaatacaattttttagttcctccaaatgaggagagttttgtattatgaagaaaa 93604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 56567 - 56606
Alignment:
Q  144 ccaaaatcctcctccaatataattttttagttccccaaat 183  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  56567 ccaaaatcctcctccaatataattttttagttctccaaat 56606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 4698 - 4748
Alignment:
Q  165 attttttagttccccaaatgtgaagagttttatattttgaagaaaaataag 215  Q
    |||||||||||||| | | | | ||||||||||||||||||||||||||||    
T  4698 attttttagttccctatacgaggagagttttatattttgaagaaaaataag 4748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 15968 - 15899
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttccccaaatgtgaagagttttatattttgaagaaaaat 212  Q
    ||||||| |||||||||||| ||||||| | ||||||||||| | ||| ||||  ||| |||||||||||    
T  15968 cccaaaaccctcctccaatacaatttttaaattccccaaatgaggagattttttcattatgaagaaaaat 15899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 6787 - 6855
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| ||| |||||||||| ||||||| | || ||||| |||| |||||||||    
T  6787 cccaaaaccctcctccaatacaatgttttagttcctccaaatgaggagggttttgtattatgaagaaaa 6855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 7770 - 7838
Alignment:
Q  143 cccaaaatcctcctccaatataattttttagttcc-ccaaatgtgaagagttttatattttgaagaaaa 210  Q
    ||||||| |||||||||||| ||| |||||||||| ||||||| | || ||||| |||| |||||||||    
T  7770 cccaaaaccctcctccaatacaatgttttagttcctccaaatgaggagggttttgtattatgaagaaaa 7838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University