View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3282_low_19 (Length: 262)
Name: NF3282_low_19
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 17626592 - 17626367
Alignment:
| Q |
18 |
gaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtgagacacttcccttttctgtatcaagtgcnnnnnnnngtggtaggatatcatta |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||| | |||||| ||||||||| |
|
|
| T |
17626592 |
gaaaaaggttttattactgtgtgtcgagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaaaagtggtacaatatcatta |
17626493 |
T |
|
| Q |
118 |
gctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgatag--ggatagatatccttaaatatttcaatttcaccttt |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
17626492 |
gccataaaggataaagaaatgtattaactgaaatatccagaaggtatttaaatatcgtgataggcgcatagatatccttaaatatttcaatttcacctct |
17626393 |
T |
|
| Q |
216 |
agtccttgtaatttgtttttctagtc |
241 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
17626392 |
agtctttgtaatttgtttttctagtc |
17626367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 17613407 - 17613182
Alignment:
| Q |
18 |
gaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtgagacacttcccttttctgtatcaagtgcnnnnnnnngtggtaggatatcatta |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||| ||||||||| |
|
|
| T |
17613407 |
gaaaaaggttttattactgtgtgttgagtcgattgatgatcgtggtgacaagcttcccttttctgtatcaagtccaaaaaaaagtggtagaatatcatta |
17613308 |
T |
|
| Q |
118 |
gct-ataaaggataaagaaatgtattaactgaaatatca-agaaggtatttaaatatcgtgatagggatagatatccttaaatatttcaatttcaccttt |
215 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
17613307 |
gcttataaaggataaaggaatgtattaactgaaatatctgagaaggtatttaaatatcgtgatactgatagatatccttaaatatttcaaattcaccttt |
17613208 |
T |
|
| Q |
216 |
agtccttgtaatttgtttttctagtc |
241 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
17613207 |
agtccttgtaatttgtttttttagtc |
17613182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 17692977 - 17692837
Alignment:
| Q |
101 |
gtggtaggatatcattagctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgatagggatagatatccttaaatat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17692977 |
gtggtagaatatcattagctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgatagggatagatatccttaaatat |
17692878 |
T |
|
| Q |
201 |
ttcaatttcacctttagtccttgtaatttgtttttctagtc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17692877 |
ttcaatttcacctttagtccttgtaatttgtttttctagtc |
17692837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 17670988 - 17670763
Alignment:
| Q |
18 |
gaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtgagacacttcccttttctgtatcaagtgcnnnnnnnngtggtaggatatcatta |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||| | |||||| |||||||| |
|
|
| T |
17670988 |
gaaaaaggttttattactgtgtgtagagtcgactgatgatcgtggtgacacgcttcccttttctgtatcaagtccaaaaaaaagtggtacagtatcatta |
17670889 |
T |
|
| Q |
118 |
gctataaaggataaagaaatgtattaactgaaatatcaagaaggtatttaaatatcgtgatag--ggatagatatccttaaatatttcaatttcaccttt |
215 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
17670888 |
gccataaaggataaagaaatgtataaactgaaatatccagaaggtatttaaatatcgtgataggcgcatagatatccttaaatatttcaatttcacctct |
17670789 |
T |
|
| Q |
216 |
agtccttgtaatttgtttttctagtc |
241 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
17670788 |
agtctttgtaatttgtttttctagtc |
17670763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 17693140 - 17693091
Alignment:
| Q |
18 |
gaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtgaga |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17693140 |
gaaaaaggttttattactgtgtgtggagtcgattgatgatcgtggtgaga |
17693091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University