View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_low_20 (Length: 252)
Name: NF3282_low_20
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 41081801 - 41081642
Alignment:
| Q |
86 |
ttgtttttaatttaggtaaacaaaatacttactcgaattctttttacaagaaataaaagattaatcattaagaaaatgctttgcaatgtgttaattttat |
185 |
Q |
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| T |
41081801 |
ttgtttttaatttaggtaaacaaaatacttactcgaattttttttacaagaaataaaagattaatcattaagaaaatgctttgcaatgtgttaattttat |
41081702 |
T |
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| Q |
186 |
ataattgtgatataatttaaaatttattccaacaataatctttgatctcctttcatctca |
245 |
Q |
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| T |
41081701 |
ataattgtgatataatttaaaatttattccaacaataatctttgatctcctttcatctca |
41081642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 41083424 - 41083331
Alignment:
| Q |
1 |
cttcttgaaggtccccatcacaaaaaccacttttcattcaatgcttacacttgatggtcatcgaattgtggttttcttttactatttgttttta |
94 |
Q |
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| T |
41083424 |
cttcttgaaggtcctcatcacaaaaaccacttttcattcaatgcttacacttgacggtcatcgaattgtggttttcttttactatttgttttta |
41083331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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