View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_low_27 (Length: 223)
Name: NF3282_low_27
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 45160504 - 45160694
Alignment:
| Q |
18 |
attcacaggataacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcaca |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45160504 |
attcacaggataacacaaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcaca |
45160603 |
T |
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| Q |
118 |
aactgttagtttctctattcttatttttttaaagagtattttggtaaatgaactactannnnnnnngctatttcattctttacttttctgtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45160604 |
aactgttagtttctctattcttatttttttaaagagtattttggtaaatgaactactattttttta-ctatttcattctttacttttctgtg |
45160694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 24127761 - 24127611
Alignment:
| Q |
18 |
attcacaggataacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcaca |
117 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||| |||||||||||| | |
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| T |
24127761 |
attcacaggttaacaccaaagaagtcttgggttaccttattttaagtgagataattccactctgcttgagcaacatggagatcggcaatgaaatatcaaa |
24127662 |
T |
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| Q |
118 |
aactgttagtttctctattcttatttttttaaagagtattttggtaaatgaa |
169 |
Q |
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| T |
24127661 |
aactgttagtttctctattttta-ttttttaaagagtattttggtaaatgaa |
24127611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 8723072 - 8722946
Alignment:
| Q |
31 |
caccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtttc |
130 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| ||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
8723072 |
caccaaagaagttttaggttaccttatttcaagtgagataattccattgcgctagagcaacatggaaatcggaaatgaaatatccaaaactgttagtttc |
8722973 |
T |
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| Q |
131 |
tctattcttatttttttaaagagtatttt |
159 |
Q |
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|||||| ||| |||||| ||||||||||| |
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| T |
8722972 |
tctatt-tta-ttttttgaagagtatttt |
8722946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 9074959 - 9074833
Alignment:
| Q |
31 |
caccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtttc |
130 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| ||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
9074959 |
caccaaagaagttttaggttaccttatttcaagtgagataattccattgcgctagagcaacatggaaatcggaaatgaaatatccaaaactgttagtttc |
9074860 |
T |
|
| Q |
131 |
tctattcttatttttttaaagagtatttt |
159 |
Q |
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|||||| ||| |||||| ||||||||||| |
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| T |
9074859 |
tctatt-tta-ttttttgaagagtatttt |
9074833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 8716740 - 8716608
Alignment:
| Q |
29 |
aacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtt |
128 |
Q |
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|
|||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | | | || |||| |
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| T |
8716740 |
aacaccaaagaagtcttagattaccttattttaagcgagataattccattgtgcttgagcaacatggaaatcggaaatgaaatattaaacaaagtgagtt |
8716641 |
T |
|
| Q |
129 |
tctctattcttatttttttaaagagtattttggt |
162 |
Q |
| |
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|||||||| |||||| ||| | |||||||||||| |
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| T |
8716640 |
tctctatttttatttattt-aggagtattttggt |
8716608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 9068627 - 9068495
Alignment:
| Q |
29 |
aacaccaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtt |
128 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | | | || |||| |
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| T |
9068627 |
aacaccaaagaagtcttagattaccttattttaagcgagataattccattgtgcttgagcaacatggaaatcggaaatgaaatattaaacaaagtgagtt |
9068528 |
T |
|
| Q |
129 |
tctctattcttatttttttaaagagtattttggt |
162 |
Q |
| |
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|||||||| |||||| ||| | |||||||||||| |
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| T |
9068527 |
tctctatttttatttattt-aggagtattttggt |
9068495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 16335818 - 16335703
Alignment:
| Q |
32 |
accaaagaagttttgggttaccttattttaagcgaggtaattccattgtgcttgagcaacatggagatcggaaatgaaatatcacaaactgttagtttct |
131 |
Q |
| |
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|||||||||||| | |||| |||| ||| ||| ||| |||||||||| ||| ||||||| | ||| |||||||| ||| ||| | ||| |||||| || | |
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| T |
16335818 |
accaaagaagttataggtttccttctttcaagtgagataattccattatgcatgagcaagaaggaaatcggaaaagaattattaaaaattgttagctttt |
16335719 |
T |
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| Q |
132 |
ctattcttattttttt |
147 |
Q |
| |
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||||| |||| ||||| |
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| T |
16335718 |
ctattattatattttt |
16335703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 9519073 - 9519134
Alignment:
| Q |
87 |
gcaacatggagatcggaaatgaaatatcacaaactgttagtttctctattcttattttttta |
148 |
Q |
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|||| ||||| ||||| || ||| |||| |||||||||||||||||||||||||| ||||| |
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| T |
9519073 |
gcaatatggaaatcggcaaagaattatccaaaactgttagtttctctattcttattgtttta |
9519134 |
T |
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