View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_low_3 (Length: 449)
Name: NF3282_low_3
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Original strand, 13309020 - 13309443
Alignment:
| Q |
11 |
cagagaatgaaatatgttgctcttttattttactattgttgttgcaatggttctgctccctaataatgtatacacaaaagttatgaattattatgatata |
110 |
Q |
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| T |
13309020 |
cagagaatgaaatatgttgctcttttattttactatttttgttgcaatggttctgctccctaataatgtatacacaaaagttatgaatgattatgatata |
13309119 |
T |
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| Q |
111 |
tgatccatttatcctagtgatagtaacttagtaagtacttcacttgatctatatacttcctccgtcctaaattataagtcgatgnnnnnnncaatttcct |
210 |
Q |
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| T |
13309120 |
tgatccatttatcctagtgatagtaacttagtaagtacttcacttgatctatatacttcctccgtcctaaattataagccgatgaaaaaaacaatttcct |
13309219 |
T |
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| Q |
211 |
gattaaaccaatccttctaataggtttgttttgttaactttagaacaaacttcctcaccattttcaccttgattttacaaaaacccacatgtaatatttg |
310 |
Q |
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| T |
13309220 |
gattaaacctatccttctaataggtttgttttgttaactttagaacaaacttcctcaccattttcaccttgattttacaaaaacccacatgtaatatttg |
13309319 |
T |
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| Q |
311 |
gcttcctagtttgtccaatgtatgactatcatatatattgatgcattacataggaaatgatttccaaaagaatggaatcatatgagatttattaaaagat |
410 |
Q |
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| T |
13309320 |
gcttcctagtttgtccaatgtatgactatcatatatattgatgcattacataggaaatgatttccaaaagaatggaatcatatgagatttattaaaagat |
13309419 |
T |
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| Q |
411 |
ctaagaacagttacatgatgcaaa |
434 |
Q |
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| T |
13309420 |
ctaagaacagttacatgatgcaaa |
13309443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 13307740 - 13307824
Alignment:
| Q |
250 |
ttagaacaaacttcctcaccattttcaccttgattttacaaaaacccacatgtaatatttggcttcctagtttgtccaatgtatg |
334 |
Q |
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| T |
13307740 |
ttaggacaaactttctcgctattttcaccttggtttcacaaagtcctatttgtaatatttggcttcctattttggtcaatgtatg |
13307824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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