View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_low_4 (Length: 436)
Name: NF3282_low_4
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 189 - 419
Target Start/End: Original strand, 27561954 - 27562184
Alignment:
| Q |
189 |
cactgttaatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacatattatcatcat |
288 |
Q |
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| T |
27561954 |
cactgttaatgatttatatctatccaattcagcgatccaatgttgaagttgatcattttccatagagtatactcgggaagtgtgtacatattatcatcat |
27562053 |
T |
|
| Q |
289 |
ttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27562054 |
ttagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt |
27562153 |
T |
|
| Q |
389 |
gcagatagctcaaatttacaaacctgaagtt |
419 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
27562154 |
gcagatagctcaaatttacaaacctgaagtt |
27562184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 191 - 419
Target Start/End: Original strand, 36669011 - 36669238
Alignment:
| Q |
191 |
ctgttaatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacata-ttatcatcatt |
289 |
Q |
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|||| ||||||||| |||||||||||||||| ||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
36669011 |
ctgtcaatgatttaaatctatccaattcagcaatccaatgttgaagttgatcctttgccaaagagtatactcgggaagtgcgtacatacttatcatcatt |
36669110 |
T |
|
| Q |
290 |
tagttcattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcattg |
389 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||| ||||||||||||||||| ||||| |
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| T |
36669111 |
tagttcattctgg-aataaacatacatgaaaagatacttttagatggaaccct-gagtcaatgcatctcaattactgaagaaataatgacaaaaccattg |
36669208 |
T |
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| Q |
390 |
cagatagctcaaatttacaaacctgaagtt |
419 |
Q |
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||||||| |||||||||||||||||||||| |
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| T |
36669209 |
cagatagttcaaatttacaaacctgaagtt |
36669238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 36668729 - 36668870
Alignment:
| Q |
19 |
ttaatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaaatgtcatggatatgctttgcattaacagcacactctaatttcaaattga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||| ||||| |||| | |
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| T |
36668729 |
ttaatacacttttgcaactgaatcttgagctcatcagtcctagagtcagaaatgtcatggatatgccttgcattaaccgcagactccaatttagaattca |
36668828 |
T |
|
| Q |
119 |
attccttctcccgctttgcgtagttaatcctgccagcctaaa |
160 |
Q |
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| T |
36668829 |
attccttctcccgttttgcaatgttagtcctgctagcctaaa |
36668870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 27563291 - 27563153
Alignment:
| Q |
20 |
taatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaaatgtcatggatatgctttgcattaacagcacactctaatttcaaattgaa |
119 |
Q |
| |
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||||||| || |||||||||| || ||| |||| ||||||| |||||| ||||| ||||| || |||||||| ||||| |||| ||||||||||| | |
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| T |
27563291 |
taatacatttctgcaactgaagctcgaggccatcggtcatag--tcagaattgtcaaggatacgccttgcattatcagcagactccaatttcaaattcag |
27563194 |
T |
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| Q |
120 |
ttccttctcccgctttgcgtagttaatcctgccagcctaaa |
160 |
Q |
| |
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||||||||||| |||| | |||| |||||||||||||| |
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| T |
27563193 |
ttccttctcccattttgagatgttagccctgccagcctaaa |
27563153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 196 - 419
Target Start/End: Original strand, 29411503 - 29411723
Alignment:
| Q |
196 |
aatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacata-ttatcatcatttagtt |
294 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||||||| |
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| T |
29411503 |
aatgatttatatctgtccaattcagcaatccagtgttgaagttgatcatttgccaaagagtatactcgggaattgcgtacatacttatcatcatttagtt |
29411602 |
T |
|
| Q |
295 |
cattctggaaataaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcattgcagat |
394 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| | | |||| | ||| |||||||||||||||||| || | |||||||||| |
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| T |
29411603 |
cattctggaaataaacac----gaaaagatacttttacatggaaccctataatgaatgtgtttcaattactcaagaaataatgataacaccattgcagat |
29411698 |
T |
|
| Q |
395 |
agctcaaatttacaaacctgaagtt |
419 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
29411699 |
agctcaaattgacaaacctgaagtt |
29411723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 29411262 - 29411410
Alignment:
| Q |
20 |
taatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaaatgtcatggatatgctttgcattaacagcacactctaatttcaaattgaa |
119 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||||| || ||||||||||| |||||||||||||| |||||||||||||| |||| |||||||| || || |
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| T |
29411262 |
taatacacttctgcaattgaagcttgagctcatcaatcctagagtcagaattgtcatggatatgccttgcattaacagcagactccaatttcaacttcaa |
29411361 |
T |
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| Q |
120 |
ttccttctcccgctttgcgtagttaatcctgccagcctaaagttgcatt |
168 |
Q |
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||||||||||| |||| | ||||| |||||||||||||| ||||||| |
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| T |
29411362 |
ctccttctcccgttttgagacgttaaccctgccagcctaaaattgcatt |
29411410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 26928621 - 26928703
Alignment:
| Q |
306 |
taaacatacatgaaaagatacttttacatggaaccctagagtaaatgcatctcatttactcaagaaataatgacaaaatcatt |
388 |
Q |
| |
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|||||| |||| |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||| |
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| T |
26928621 |
taaacacacataaaaatatacttttacatggaaccctagagtatatgcatctaaattactcaagaaataatgacaaaaccatt |
26928703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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