View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3282_low_5 (Length: 426)
Name: NF3282_low_5
Description: NF3282
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3282_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 43396651 - 43396236
Alignment:
| Q |
1 |
tttccaccaccatcattctctttctgtctataacccaatagccatgcatgacaaatagcagccaccatcgatgccgtacctgcaccacatacaaataaat |
100 |
Q |
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| T |
43396651 |
tttccaccaccatcattctctttctgtctataacccaatagccatgcatggcaaatagcagccaccatcgacgccgtacctgcaccacatacaaataaat |
43396552 |
T |
|
| Q |
101 |
tccacactttccaacactcccaaaatcaaatcaacaaaacaaattcagtccatgcttggtctcacgtgagtttatcaaaatcacagcgagctaccgtagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43396551 |
tccacactttccaacactcccaaaatcaaatcaacaaaacaaattcagtccatgtttggtctcacgtgagtttatcaaaatcacagtgagctaccgtagc |
43396452 |
T |
|
| Q |
201 |
ttttgaaaattataatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396451 |
ttttgaaaattataatgctcacagtgattccgacaaatttagcatgatagaaaacatgcattcaagtttttcactaactgtttaaatgcccagaaagcac |
43396352 |
T |
|
| Q |
301 |
aattttgatttcgacatttgtatgaagctctcccttcgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43396351 |
aattttgatttcgacatttgtatgaagctctcccttcgagaatctctgaaacaaattcctctgctctttcaaaaacccattaagactatactcctccgta |
43396252 |
T |
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| Q |
401 |
gtttcttcttcttcct |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
43396251 |
gtttcttcttcttcct |
43396236 |
T |
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